| 2017 | SP | Identifying Personal DNA Methylation Profiles by Genotype Inference. | Michael Backes, Pascal Berrang, Matthias Bieg, Roland Eils, Carl Herrmann, Mathias Humbert, Irina Lehmann |
| 2011 | AAAI | Reconstructing the Stochastic Evolution Diagram of Dynamic Complex Systems. | Navid Bazzazzadeh, Benedikt Brors, Roland Eils |
| 2011 | FUSION | Reconstructing evolutionary modular networks from time series data. | Navid Bazzazzadeh, Benedikt Brors, Roland Eils |
| 2007 | CIBCB | Geometrical probability approach for analysis of 3D chromatin structure in interphase cell nuclei. | Evgeny Gladilin, Sandra Gtze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils |
| 2006 | CVPR | Feature Selection for Evaluating Fluorescence Microscopy Images in Genome-Wide Cell Screens. | Vassili Kovalev, Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr |
| 2006 | MICCAI | Automated Analysis of the Mitotic Phases of Human Cells in 3D Fluorescence Microscopy Image Sequences. | Nathalie Harder, Felipe Mora-Bermdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr |
| 2006 | MICCAI | Non-rigid Registration of 3D Multi-channel Microscopy Images of Cell Nuclei. | Siwei Yang, Daniela Khler, Kathrin Teller, Thomas Cremer, Patricia Le Baccon, Edith Heard, Roland Eils, Karl Rohr |
| 2002 | GI | Machine Learning Approaches for Deciphering Complex Pathomechanisms in Cancer. | Roland Eils |
| 2001 | MICCAI | An Active Contour Model for Segmentation Based on Cubic B-splines and Gradient Vector Flow. | Matthias Gebhard, Julian Mattes, Roland Eils |
| 2001 | MICCAI | New Tools for Visualization and Quantification in Dynamic Processes: Application to the Nuclear Envelope Dynamics During Mitosis. | Julian Mattes, Johannes Fieres, Jol Beaudouin, Daniel Gerlich, Jan Ellenberg, Roland Eils |