| 2025 | AAAI | GoBERT: Gene Ontology Graph Informed BERT for Universal Gene Function Prediction. | Yuwei Miao, Yuzhi Guo, Hehuan Ma, Jingquan Yan, Feng Jiang, Rui Liao, Junzhou Huang |
| 2025 | ICLR | Beyond Sequence: Impact of Geometric Context for RNA Property Prediction. | Junjie Xu, Artem Moskalev, Tommaso Mansi, Mangal Prakash, Rui Liao |
| 2025 | ICLR | HELM: Hierarchical Encoding for mRNA Language Modeling. | Mehdi Yazdani-Jahromi, Mangal Prakash, Tommaso Mansi, Artem Moskalev, Rui Liao |
| 2025 | ICML | InfoSEM: A Deep Generative Model with Informative Priors for Gene Regulatory Network Inference. | Tianyu Cui, Song-Jun Xu, Artem Moskalev, Shuwei Li, Tommaso Mansi, Mangal Prakash, Rui Liao |
| 2025 | ICML | Geometric Hyena Networks for Large-scale Equivariant Learning. | Artem Moskalev, Mangal Prakash, Junjie Xu, Tianyu Cui, Rui Liao, Tommaso Mansi |
| 2025 | MICCAI | MoMIL: Mixture of Multi-instance Learners for Modeling Multiple Compound Activities in High Content Imaging. | Pushpak Pati, Hsiu-Chi Cheng, Steffen Jaensch, Walid M. Abdelmoula, Krishna Chaitanya, Michiel Van Dyck, Tom Albuquerque, Samantha Allen, Litao Zhang, Tommaso Mansi, Rui Liao, Zhoubing Xu |
| 2020 | MICCAI | Cycle Ynet: Semi-supervised Tracking of 3D Anatomical Landmarks. | Jianzhe Lin, Yue Zhang, Abdoul-aziz Amadou, Ingmar Voigt, Tommaso Mansi, Rui Liao |
| 2020 | MICCAI | A Bottom-Up Approach for Real-Time Mitral Valve Annulus Modeling on 3D Echo Images. | Yue Zhang, Abdoul-aziz Amadou, Ingmar Voigt, Viorel Mihalef, Helene Houle, Matthias John, Tommaso Mansi, Rui Liao |
| 2018 | AAAI | Dilated FCN for Multi-Agent 2D/3D Medical Image Registration. | Shun Miao, Sebastien Piat, Peter Walter Fischer, Ahmet Tuysuzoglu, Philip Walter Mewes, Tommaso Mansi, Rui Liao |
| 2018 | ICIP | Structural Domain Adaptation with Latent Graph Alignment. | Yue Zhang, Shun Miao, Rui Liao |
| 2018 | MICCAI | Task Driven Generative Modeling for Unsupervised Domain Adaptation: Application to X-ray Image Segmentation. | Yue Zhang, Shun Miao, Tommaso Mansi, Rui Liao |
| 2017 | AAAI | An Artificial Agent for Robust Image Registration. | Rui Liao, Shun Miao, Pierre de Tournemire, Sasa Grbic, Ali Kamen, Tommaso Mansi, Dorin Comaniciu |
| 2017 | MICCAI | Robust Non-rigid Registration Through Agent-Based Action Learning. | Julian Krebs, Tommaso Mansi, Herv Delingette, Li Zhang, Florin C. Ghesu, Shun Miao, Andreas K. Maier, Nicholas Ayache, Rui Liao, Ali Kamen |
| 2017 | MICCAI | Learning CNNs with Pairwise Domain Adaption for Real-Time 6DoF Ultrasound Transducer Detection and Tracking from X-Ray Images. | Jiannan Zheng, Shun Miao, Rui Liao |
| 2016 | MICCAI | Towards Automated Ultrasound Transesophageal Echocardiography and X-Ray Fluoroscopy Fusion Using an Image-Based Co-registration Method. | Shanhui Sun, Shun Miao, Tobias Heimann, Terrence Chen, Markus Kaiser, Matthias John, Erin Girard, Rui Liao |
| 2013 | ICASSP | Robust 2-D/3-D registration of CT volumes with contrast-enhanced X-ray sequences in electrophysiology based on a weighted similarity measure and sequential subspace optimization. | Xuan Zhao, Shun Miao, Liang Du, Rui Liao |
| 2013 | MICCAI | Hybrid Multimodal Deformable Registration with a Data-Driven Deformation Prior. | Yongning Lu, Ying Sun, Rui Liao, Sim Heng Ong |
| 2013 | MICCAI | Intensity-Based 3D-2D Mesh-to-Image Registration Using Mesh-Based Digitally Reconstructed Radiography. | Shun Miao, Tri Huynh, Cyprien Adnet, Marcus Pfister, Rui Liao |
| 2013 | MICCAI | Toward Accurate and Robust 2-D/3-D Registration of Implant Models to Single-Plane Fluoroscopy. | Shun Miao, Rui Liao, Joseph Lucas, Christophe Chefd'Hotel |
| 2013 | MICCAI | System and Method for 3-D/3-D Registration between Non-contrast-enhanced CBCT and Contrast-Enhanced CT for Abdominal Aortic Aneurysm Stenting. | Shun Miao, Rui Liao, Marcus Pfister, Li Zhang, Vincent Ordy |
| 2012 | ACCV | Registration of Pre-Operative CT and Non-Contrast-Enhanced C-Arm CT: An Application to Trans-Catheter Aortic Valve Implantation (TAVI). | Yongning Lu, Ying Sun, Rui Liao, Sim Heng Ong |
| 2012 | ICPR | Learning-based deformable registration using weighted mutual information. | Yongning Lu, Rui Liao, Li Zhang, Ying Sun, Christophe Chefd'Hotel, Sim Heng Ong |
| 2012 | SENSYS | Weather-clustering based strategy design for dynamic demand response building HVAC control. | Rui Liao, Geng Li, Shun Miao, Yan Lu, Jianmin Zhu, Ling Shen |
| 2011 | MICCAI | Combined Cardiac and Respiratory Motion Compensation for Atrial Fibrillation Ablation Procedures. | Alexander Brost, Wen Wu, Martin Koch, Andreas Wimmer, Terrence Chen, Rui Liao, Joachim Hornegger, Norbert Strobel |
| 2010 | CVPR | Model-based respiratory motion compensation for image-guided cardiac interventions. | Matthias Schneider, Hari Sundar, Rui Liao, Joachim Hornegger, Chenyang Xu |
| 2010 | MICCAI | System to Guide Transcatheter Aortic Valve Implantations Based on Interventional C-Arm CT Imaging. | Matthias John, Rui Liao, Yefeng Zheng, Alois Nttling, Jan M. Boese, Uwe Kirschstein, Jrg Kempfert, Thomas Walther |
| 2010 | MICCAI | Automatic Aorta Segmentation and Valve Landmark Detection in C-Arm CT: Application to Aortic Valve Implantation. | Yefeng Zheng, Matthias John, Rui Liao, Jan M. Boese, Uwe Kirschstein, Bogdan Georgescu, Shaohua Kevin Zhou, Jrg Kempfert, Thomas Walther, Gernot Brockmann |
| 2009 | MICCAI | 3-D Respiratory Motion Compensation during EP Procedures by Image-Based 3-D Lasso Catheter Model Generation and Tracking. | Alexander Brost, Rui Liao, Joachim Hornegger, Norbert Strobel |
| 2007 | MICCAI | Image Guidance of Intracardiac Ultrasound with Fusion of Pre-operative Images. | Yiyong Sun, Samuel Kadoury, Yong Li, Matthias John, Jeff Resnick, Gerry Plambeck, Rui Liao, Frank Sauer, Chenyang Xu |
| 2004 | ICASSP | Motion-corrected independent component analysis for robust functional magnetic resonance imaging. | Rui Liao, Martin J. McKeown, Jeffrey L. Krolik |