| 2019 | MICCAI | Fine Tuning U-Net for Ultrasound Image Segmentation: Which Layers? | Mina Amiri, Rupert Brooks, Hassan Rivaz |
| 2019 | MICCAI | DeepAAA: Clinically Applicable and Generalizable Detection of Abdominal Aortic Aneurysm Using Deep Learning. | Jen-Tang Lu, Rupert Brooks, Stefan Hahn, Jin Chen, Varun Buch, Gopal Kotecha, Katherine P. Andriole, Brian B. Ghoshhajra, Joel Pinto, Paul Vozila, Mark Michalski, Neil A. Tenenholtz |
| 2016 | MICCAI | Graph-Based 3D-Ultrasound Reconstruction of the Liver in the Presence of Respiratory Motion. | Houssem-Eddine Gueziri, Sbastien Tremblay, Catherine Laporte, Rupert Brooks |
| 2011 | MICCAI | Intrafraction Prostate Motion Correction Using a Non-rectilinear Image Frame. | Rupert Brooks |
| 2009 | ACCV | Better Correspondence by Registration. | Shufei Fan, Rupert Brooks, Frank P. Ferrie |
| 2009 | MICCAI | A Computer Model of Soft Tissue Interaction with a Surgical Aspirator. | Vincent Mora, Di Jiang, Rupert Brooks, Sbastien Delorme |
| 2008 | MICCAI | Deformable Ultrasound Registration without Reconstruction. | Rupert Brooks, D. Louis Collins, Xavier Morandi, Tal Arbel |
| 2007 | IJCAI | Fast Image Alignment Using Anytime Algorithms. | Rupert Brooks, Tal Arbel, Doina Precup |
| 2006 | ICPR | Generalizing inverse compositional image alignment. | Rupert Brooks, Tal Arbel |
| 2004 | ICPR | A Fast Discriminant Approach to Active Object Recognition and Pose Estimation. | Catherine Laporte, Rupert Brooks, Tal Arbel |