| 2024 | PAKDD | Fast Edit Distance Prediction for All Pairs of Sequences in Very Large NGS Datasets. | A. K. M. Tauhidul Islam, Sakti Pramanik |
| 2020 | CATA | A Study of Update Methods for BoND-Tree Index on Non-ordered Discrete Vector Data. | Ramblin Cherniak, Qiang Zhu, Sakti Pramanik |
| 2018 | ICDM | Predicted Edit Distance Based Clustering of Gene Sequences. | Sakti Pramanik, A. K. M. Tauhidul Islam, Shamik Sural |
| 2017 | ICDM | RESTRAC: REference Sequence Based Space TRAnsformation for Clustering. | A. K. M. Tauhidul Islam, Sakti Pramanik, Vahid Mirjalili, Shamik Sural |
| 2017 | IDEAS | Exploring Deletion Strategies for the BoND-Tree in Multidimensional Non-ordered Discrete Data Spaces. | Ramblin Cherniak, Qiang Zhu, Yarong Gu, Sakti Pramanik |
| 2015 | BIBE | Back translated peptide K-mer search and local alignment in large DNA sequence databases using BoND-SD-tree indexing. | A. K. M. Tauhidul Islam, Sakti Pramanik, Xinge Ji, James R. Cole, Qiang Zhu |
| 2012 | SAC | Minimum bounding boxes for regular cross-polytopes. | Salman Shahid, Sakti Pramanik, Charles B. Owen |
| 2010 | BIBE | BLAST Tree: Fast Filtering for Genomic Sequence Classification. | Stuart King, Yanni Sun, James R. Cole, Sakti Pramanik |
| 2009 | EDBT | The C-ND tree: a multidimensional index for hybrid continuous and non-ordered discrete data spaces. | Changqing Chen, Sakti Pramanik, Qiang Zhu, Alok Watve, Gang Qian |
| 2008 | DASFAA | Bulk-Loading the ND-Tree in Non-ordered Discrete Data Spaces. | Hyun-Jeong Seok, Gang Qian, Qiang Zhu, Alexander R. Oswald, Sakti Pramanik |
| 2008 | DEXA | Space-Partitioning-Based Bulk-Loading for the NSP-Tree in Non-ordered Discrete Data Spaces. | Gang Qian, Hyun-Jeong Seok, Qiang Zhu, Sakti Pramanik |
| 2007 | ICDE | On k-Nearest Neighbor Searching in Non-Ordered Discrete Data Spaces. | Dashiell Kolbe, Qiang Zhu, Sakti Pramanik |
| 2006 | BIBE | Sequence Homology Search Based on Database Indexing Using the Profile Hidden Markov Model. | Qiang Xue, James R. Cole, Sakti Pramanik |
| 2004 | SAC | Similarity between Euclidean and cosine angle distance for nearest neighbor queries. | Gang Qian, Shamik Sural, Yuelong Gu, Sakti Pramanik |
| 2003 | VLDB | The ND-Tree: A Dynamic Indexing Technique for Multidimensional Non-ordered Discrete Data Spaces. | Gang Qian, Qiang Zhu, Qiang Xue, Sakti Pramanik |
| 2002 | ICIP | A comparative analysis of two distance measures in color image databases. | Shamik Sural, Gang Qian, Sakti Pramanik |
| 2002 | ICIP | Segmentation and histogram generation using the HSV color space for image retrieval. | Shamik Sural, Gang Qian, Sakti Pramanik |
| 1999 | ICDE | Fast Approximate Search Algorithm for Nearest Neighbor Queries in High Dimensions. | Sakti Pramanik, Jinhua Li |
| 1996 | ICDE | HiTi Graph Model of Topographical Roadmaps in Navigation Systems. | Sungwon Jung, Sakti Pramanik |
| 1996 | ISMB | Inferring Relatedness of a Macromolecule to a Sequence Database Without Sequencing. | Jin Kim, James R. Cole, Eric Torng, Sakti Pramanik |
| 1995 | DASFAA | An Efficient Representation of Distributed Fragments of Recursive Relations. | Sungwon Jung, Sakti Pramanik |
| 1994 | ISMB | An Efficient Method for Multiple Sequence Alignment. | Jin Kim, Sakti Pramanik |
| 1994 | ISMIS | Declarative Semantics for Contradictory Modular Logic Programs. | Anastasia Analyti, Sakti Pramanik |
| 1993 | ICPP | A Distributed Load Balancing Scheme for Data Parallel Applications. | Walid R. Tout, Sakti Pramanik |
| 1992 | EDBT | Fragmentation of Recursive Relations in Distributed Datbases. | Sakti Pramanik, David T. Kao, David Vineyard |
| 1992 | SIGMOD | Fast Search in Main Memory Databases. | Anastasia Analyti, Sakti Pramanik |
| 1990 | ICPP | Distributed Linear Hashing for Main Memory Databases. | Charles R. Severance, Sakti Pramanik |
| 1990 | VLDB | Distributed Linear Hashing and Parallel Projection in Main Memory Databases. | Charles R. Severance, Sakti Pramanik, P. Wolberg |
| 1989 | ICPP | On the Data Distribution Problems for Range Queries. | Myoung-Ho Kim, Sakti Pramanik |
| 1988 | SIGMOD | Optimal File Distribution For Partial Match Retrieval. | Myoung-Ho Kim, Sakti Pramanik |
| 1987 | ICPP | HCB-Tree: A B-Tree Structure for Parallel Processing. | Sakti Pramanik, Myoung-Ho Kim |
| 1982 | ISCA | Database filters. | Sakti Pramanik |
| 1981 | VLDB | Hardware Organization for Nonnumeric Processing | Sakti Pramanik |