| 2020 | RECOMB | Privacy-Preserving Biomedical Database Queries with Optimal Privacy-Utility Trade-Offs. | Hyunghoon Cho, Sean Simmons, Ryan Kim, Bonnie Berger |
| 2019 | PSB | Protecting Genomic Data Privacy with Probabilistic Modeling. | Sean Simmons, Bonnie Berger, S. Cenk Sahinalp |
| 2018 | ISVC | Accurate and Efficient Non-Parametric Background Detection for Video Surveillance. | William Porr, James Easton, Alireza Tavakkoli, Donald Loffredo, Sean Simmons |
| 2018 | ISVC | GPU Accelerated Non-Parametric Background Subtraction. | William Porr, James Easton, Alireza Tavakkoli, Donald Loffredo, Sean Simmons |
| 2018 | ISVC | Sensory Fusion and Intent Recognition for Accurate Gesture Recognition in Virtual Environments. | Sean Simmons, Kevin Clark, Alireza Tavakkoli, Donald Loffredo |
| 2016 | RECOMB | Enabling Privacy Preserving GWAS in Heterogeneous Human Populations. | Sean Simmons, S. Cenk Sahinalp, Bonnie Berger |
| 2015 | SP | One Size Doesn't Fit All: Measuring Individual Privacy in Aggregate Genomic Data. | Sean Simmons, Bonnie Berger |
| 2014 | LATA | Computing Depths of Patterns. | Francine Blanchet-Sadri, Andrew Lohr, Sean Simmons, Brent Woodhouse |
| 2012 | MFCS | Abelian Pattern Avoidance in Partial Words. | Francine Blanchet-Sadri, Sean Simmons |
| 2011 | DLT | Avoiding Abelian Powers in Partial Words. | Francine Blanchet-Sadri, Sean Simmons |
| 2010 | LATA | Abelian Square-Free Partial Words. | Francine Blanchet-Sadri, Jane I. Kim, Robert Mercas, William Severa, Sean Simmons |
| 2010 | LATA | Avoidable Binary Patterns in Partial Words. | Francine Blanchet-Sadri, Robert Mercas, Sean Simmons, Eric Weissenstein |