| 2014 | FUSION | Parameter estimation in multi-compartment SIR model. | Masaya M. Saito, Seiya Imoto, Rui Yamaguchi, Satoru Miyano, Tomoyuki Higuchi |
| 2013 | FUSION | Estimation of abrupt changes in sentinel observation data of influenza epidemics in Japan. | Masaya M. Saito, Seiya Imoto, Rui Yamaguchi, Satoru Miyano, Tomoyuki Higuchi |
| 2012 | FUSION | Identifiability of local transmissibility parameters in agent-based pandemic simulation. | Masaya M. Saito, Seiya Imoto, Rui Yamaguchi, Satoru Miyano, Tomoyuki Higuchi |
| 2011 | FUSION | Estimation of macroscopic parameter in agent-based pandemic simulation. | Masaya M. Saito, Seiya Imoto, Rui Yamaguchi, Satoru Miyano, Tomoyuki Higuchi |
| 2010 | BIBE | Identifying Hidden Confounders in Gene Networks by Bayesian Networks. | Tomoya Higashigaki, Kaname Kojima, Rui Yamaguchi, Masato Inoue, Seiya Imoto, Satoru Miyano |
| 2010 | ICANN | Discovery of Exogenous Variables in Data with More Variables Than Observations. | Yasuhiro Sogawa, Shohei Shimizu, Aapo Hyvrinen, Takashi Washio, Teppei Shimamura, Seiya Imoto |
| 2009 | PSB | Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks. | Yoshinori Tamada, Hiromitsu Araki, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Yukiko Nakanishi, Yuki Tomiyasu, Kaori Yasuda, Ben Dunmore, Deborah Sanders, Sally Humphreys, Cristin G. Print, Stephen D. Charnock-Jones, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano |
| 2007 | BIBE | A Structure Learning Algorithm for Inference of Gene Networks from Microarray Gene Expression Data Using Bayesian Networks. | Kazuyuki Numata, Seiya Imoto, Satoru Miyano |
| 2007 | BIBE | Computational Genome-Wide Discovery of Aberrant Splice Variations with Exon Expression Profiles. | Ryo Yoshida, Kazuyuki Numata, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Kazuko Ueno, Satoru Miyano |
| 2006 | PSB | Computational Strategy for Discovering Druggable Gene Networks from Genome-Wide RNA Expression Profiles. | Seiya Imoto, Yoshinori Tamada, Hiromitsu Araki, Kaori Yasuda, Cristin G. Print, Stephen D. Charnock-Jones, Deborah Sanders, Christopher J. Savoie, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano |
| 2005 | ECCB | Estimating gene regulatory networks and protein-protein interactions of | Naoki Nariai, Yoshinori Tamada, Seiya Imoto, Satoru Miyano |
| 2005 | ICCSA | Estimating Gene Networks from Expression Data and Binding Location Data via Boolean Networks. | Osamu Hirose, Naoki Nariai, Yoshinori Tamada, Hideo Bannai, Seiya Imoto, Satoru Miyano |
| 2005 | ICCSA | A Penalized Likelihood Estimation on Transcriptional Module-Based Clustering. | Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi |
| 2004 | BIBE | Case-Control Study of Binary Disease Trait Considering Interactions between SNPs and Environmental Effects using Logistic Regression. | Reiichiro Nakamichi, Seiya Imoto, Satoru Miyano |
| 2004 | ISMB | Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data. | Michiel J. L. de Hoon, Yuko Makita, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Kenta Nakai, Satoru Miyano |
| 2004 | PSB | Predicting the Operon Structure of Bacillus subtilis Using Operon Length, Intergene Distance, and Gene Expression Information. | Michiel J. L. de Hoon, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Satoru Miyano |
| 2004 | PSB | Using Protein-Protein Interactions for Refining Gene Networks Estimated from Microarray Data by Bayesian Networks. | Naoki Nariai, SunYong Kim, Seiya Imoto, Satoru Miyano |
| 2004 | PSB | Finding Optimal Models for Small Gene Networks. | Sascha Ott, Seiya Imoto, Satoru Miyano |
| 2003 | ECCB | Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection. | Yoshinori Tamada, SunYong Kim, Hideo Bannai, Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano |
| 2003 | PSB | Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data of Bacillus Subtilis Using Differential Equations. | Michiel J. L. de Hoon, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Satoru Miyano |
| 2002 | DIS | Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data Using Differential Equations. | Michiel J. L. de Hoon, Seiya Imoto, Satoru Miyano |
| 2002 | PSB | Estimation of Genetic Networks and Functional Structures Between Genes by Using Bayesian Networks and Nonparametric Regression. | Seiya Imoto, Takao Goto, Satoru Miyano |