| 2025 | ECSQARU | Winning by Numbers: Connecting Strong Admissibility to Optimal Play in Argumentation. | Shawn Bowers, Martin Caminada, Bertram Ludscher |
| 2025 | EDBT | LogicLM: Robust Application of Large Language Models with Logic Programming for Data Analytics. | Evgeny S. Skvortsov, Shayan Mirjafari, Ojaswa Garg, Yilin Xia, Shawn Bowers, Bertram Ludscher |
| 2025 | EDBT | Logica-TGD: Transforming Graph Databases Logically. | Evgeny S. Skvortsov, Yilin Xia, Shawn Bowers, Bertram Ludscher |
| 2025 | ICAIL | AF-XRAY: Visual Explanation and Resolution of Ambiguity in Legal Argumentation Frameworks. | Yilin Xia, Heng Zheng, Shawn Bowers, Bertram Ludscher |
| 2025 | LOPSTR | Natural Language to Logica: Towards Interactive and Explainable Data Analytics. | Ojaswa Garg, Shayan Mirjafari, Yilin Xia, Shawn Bowers, Bertram Ludscher, Evgeny S. Skvortsov |
| 2024 | COMMA | The Skeptic's Argumentation Game or: Well-Founded Explanations for Mere Mortals. | Shawn Bowers, Yilin Xia, Bertram Ludscher |
| 2024 | COMMA | Layered Visualization of Argumentation Frameworks. | Yilin Xia, Daphne Odekerken, Shawn Bowers, Bertram Ludscher |
| 2024 | ICLP | From Logic Programming to Programming in Logica: A First-Course in Declarative Data Science & Engineering. | Evgeny S. Skvortsov, Yilin Xia, Shawn Bowers, Bertram Ludscher |
| 2012 | SSDBM | Database Support for Exploring Scientific Workflow Provenance Graphs. | Manish Kumar Anand, Shawn Bowers, Bertram Ludscher |
| 2011 | DEXA | Approaches for Semantically Annotating and Discovering Scientific Observational Data. | Huiping Cao, Shawn Bowers, Mark P. Schildhauer |
| 2011 | ICDE | Scientific workflow design 2.0: Demonstrating streaming data collections in Kepler. | Lei Dou, Daniel Zinn, Timothy M. McPhillips, Sven Khler, Sean Riddle, Shawn Bowers, Bertram Ludscher |
| 2011 | SERVICES | Approaches for Implementing Persistent Queues within Data-Intensive Scientific Workflows. | Michael Agun, Shawn Bowers |
| 2010 | CIKM | A semantic annotation framework for retrieving and analyzing observational datasets. | Shawn Bowers, Huiping Cao, Mark Schildhauer, Matthew B. Jones, Ben Leinfelder, Margaret O'Brien |
| 2010 | EDBT | Techniques for efficiently querying scientific workflow provenance graphs. | Manish Kumar Anand, Shawn Bowers, Bertram Ludscher |
| 2010 | ICDE | Provenance browser: Displaying and querying scientific workflow provenance graphs. | Manish Kumar Anand, Shawn Bowers, Bertram Ludscher |
| 2010 | ICDE | Towards best-effort merge of taxonomically organized data. | David Thau, Shawn Bowers, Bertram Ludscher |
| 2010 | ICDE | XML-based computation for scientific workflows. | Daniel Zinn, Shawn Bowers, Bertram Ludscher |
| 2009 | BPM | Scientific Workflows: Business as Usual? | Bertram Ludscher, Mathias Weske, Timothy M. McPhillips, Shawn Bowers |
| 2009 | CISIS | Improving Data Discovery for Metadata Repositories through Semantic Search. | Chad Berkley, Shawn Bowers, Matthew B. Jones, Joshua S. Madin, Mark Schildhauer |
| 2009 | EDBT | Efficient provenance storage over nested data collections. | Manish Kumar Anand, Shawn Bowers, Timothy M. McPhillips, Bertram Ludscher |
| 2009 | ICDE | X-CSR: Dataflow Optimization for Distributed XML Process Pipelines. | Daniel Zinn, Shawn Bowers, Timothy M. McPhillips, Bertram Ludscher |
| 2009 | SC | A navigation model for exploring scientific workflow provenance graphs. | Manish Kumar Anand, Shawn Bowers, Bertram Ludscher |
| 2009 | SC | Scientific workflow design with data assembly lines. | Daniel Zinn, Shawn Bowers, Timothy M. McPhillips, Bertram Ludscher |
| 2009 | SSDBM | Exploring Scientific Workflow Provenance Using Hybrid Queries over Nested Data and Lineage Graphs. | Manish Kumar Anand, Shawn Bowers, Timothy M. McPhillips, Bertram Ludscher |
| 2008 | CIKM | Merging taxonomies under RCC-5 algebraic articulations. | David Thau, Shawn Bowers, Bertram Ludscher |
| 2008 | ER | A Conceptual Modeling Framework for Expressing Observational Data Semantics. | Shawn Bowers, Joshua S. Madin, Mark P. Schildhauer |
| 2008 | SSDBM | Flexible Scientific Workflow Modeling Using Frames, Templates, and Dynamic Embedding. | Anne H. H. Ngu, Shawn Bowers, Nicholas Haasch, Timothy M. McPhillips, Terence Critchlow |
| 2006 | ICDE | Enabling ScientificWorkflow Reuse through Structured Composition of Dataflow and Control-Flow. | Shawn Bowers, Bertram Ludscher, Anne H. H. Ngu, Terence Critchlow |
| 2005 | ER | Actor-Oriented Design of Scientific Workflows. | Shawn Bowers, Bertram Ludscher |
| 2005 | WISE | Towards Automatic Generation of Semantic Types in Scientific Workflows. | Shawn Bowers, Bertram Ludscher |
| 2005 | SSDBM | Incorporating Semantics in Scientific Workflow Authoring. | Chad Berkley, Shawn Bowers, Matthew B. Jones, Bertram Ludscher, Mark Schildhauer, Jing Tao |
| 2005 | SSDBM | Creating and Providing Data Management Services for the Biological and Ecological Sciences: Science Environment for Ecological Knowledge. | Samantha Romanello, James Beach, Shawn Bowers, Matthew B. Jones, Bertram Ludscher, William Michener, Deana Pennington, Arcot Rajasekar, Mark Schildhauer |
| 2004 | APCCM | Putting Integrated Information in Context: Superimposing Conceptual Models with SPARCE. | Sudarshan Murthy, Lois M. L. Delcambre, David Maier, Shawn Bowers |
| 2004 | ER | Incremental Navigation: Providing Simple and Generic Access to Heterogeneous Structures. | Shawn Bowers, Lois M. L. Delcambre |
| 2004 | ICDE | Superimposed Applications using SPARCE. | Sudarshan Murthy, David Maier, Lois M. L. Delcambre, Shawn Bowers |
| 2004 | SSDBM | On Integrating Scientific Resources through Semantic Registration. | Shawn Bowers, Kai Lin, Bertram Ludscher |
| 2003 | ER | The Uni-level Description: A Uniform Framework for Representing Information in Multiple Data Models. | Shawn Bowers, Lois M. L. Delcambre |
| 2002 | ER | Superimposed Schematics: Introducing E-R Structure for In-Situ Information Selections. | Shawn Bowers, Lois M. L. Delcambre, David Maier |
| 2001 | ICDE | Bundles in Captivity: An Application of Superimposed Information. | Lois M. L. Delcambre, David Maier, Shawn Bowers, Mathew Weaver, Longxing Deng, Paul N. Gorman, Joan S. Ash, Mary Lavelle, Jason A. Lyman |
| 1999 | ACSAC | SAM: Security Adaptation Manager . | Heather M. Hinton, Crispin Cowan, Lois M. L. Delcambre, Shawn Bowers |