Shawn N. Murphy
Publication record assembled from the DBLP archive of ranked conferences.
Papers indexed
85
Venues
4
Active years
1997–2022
Best venue rank
A*
Where they publish
Papers
85 indexed papers, newest first.
| Year | Venue | Title | Authors |
|---|---|---|---|
| 2022 | AMIA | A Deductive Data-Driven Pipeline Powered by MLHO for Post-Acute Sequelae of COVID-19 (PASC) Phenotyping. | Arianna Dagliati, Zachary H. Strasser, Rebecca Mesa, Zahra Shakeri, Alaleh Azhir, Riccardo Bellazzi, Shawn N. Murphy, Hossein Estiri |
| 2022 | AMIA | Informatics for Integrating Biology and the Bedside (i2b2) in 2022: Single Sign On and Synthetic Data. | Jeffrey G. Klann, Michael Mendis, Kevin Bui, Griffin M. Weber, Diane Keogh, Shawn N. Murphy |
| 2022 | AMIA | Distinguishing Admissions Specifically for COVID-19 from Incidental SARS-CoV-2 Admissions. | Jeffrey G. Klann, Zachary H. Strasser, Chris J. Kennedy, Meghan Hutch, John H. Holmes, Gabriel A. Brat, Shawn N. Murphy |
| 2022 | AMIA | Research Patient Data Repositories: Perspectives from JAMIA Special Issue Editors on the Next Generation of Multi-Institutional Data Sharing. | Genevieve Melton-Meaux, Leslie Lenert, Michael J. Becich, Shawn N. Murphy, Thomas R. Campion Jr. |
| 2022 | AMIA | Dynamic Reaction Picklist for Improving Allergy Reaction Documentation: A Usability Study. | Liqin Wang, Heekyong Park, Sachin Vallamkonda, Diane L. Seger, Suzanne V. Blackley, Pamela M. Garabedian, Foster R. Goss, Kimberly G. Blumenthal, David W. Bates, Shawn N. Murphy, Li Zhou |
| 2022 | AMIA | The Informatics of RECOVER: Understanding the Post Acute Sequelae of SARS-CoV-2 Infection. | Mark G. Weiner, Charles Bailey, Richard R. Moffitt, Shawn N. Murphy |
| 2021 | AMIA | Integrating Informatics for Integrating Biology and the Bedside with tranSMART: Flexible Data Warehousing with Complex Analytics. | Jeffrey G. Klann, Michael Mendis, Peter Rice, Rudy Potenzone, Louisa May Klann, Griffin M. Weber, Diane Keogh, Shawn N. Murphy |
| 2021 | AMIA | Combining Chart Review and Hospital System Dynamics for Electronic Health Record Phenotyping in an International COVID-19 Research Network. | Jeffrey G. Klann, Griffin M. Weber, Emma Perez, William Yuan, Gabriel A. Brat, Shawn N. Murphy |
| 2021 | AMIA | Temporal Phenotypic Pathways of Post-Acute Sequelae of SARS-CoV-2 by an International Consortium for Clinical Characterization of COVID-19 (4CE). | Shawn N. Murphy, Hossein Estiri, Arianna Dagliati, Riccardo Bellazzi, John H. Holmes |
| 2021 | AMIA | Evaluation of the Portability of Natural Language Processing-based Computable Phenotypes in the eMERGE Network. | Jennifer A. Pacheco, Luke V. Rasmussen, Ken Wiley, Thomas N. Person, David J. Cronkite, Sunghwan Sohn, Shawn N. Murphy, Justin H. Gundelach, Vivian S. Gainer, Victor M. Castro, Cong Liu, Todd Lingren, Frank D. Mentch, Agnes S. Sundaresan, Garrett Eickelberg, Valerie Willis, Al'ona Furmanchuk, Roshan Patel, David S. Carrell, Marc S. Williams, Elizabeth W. Karlson, Jodell E. Linder, Yuan Luo, Chunhua Weng, Wei-Qi Wei |
| 2021 | AMIA | A Machine Learning Approach for Identifying Emergent Phenotypes Associated with a Previous COVID Infection. | Zachary H. Strasser, Hossein Estiri, Shawn N. Murphy |
| 2021 | AMIA | A Novel Data Portal to Enable COVID-19 Data Integration and Analysis. | Nich Wattanasin, Victor M. Castro, Vivian S. Gainer, Barbara Benoit, Andrew Cagan, Reeta Metta, Shawn N. Murphy |
| 2020 | AIME | Transitive Sequential Pattern Mining for Discrete Clinical Data. | Hossein Estiri, Sebastien Vasey, Shawn N. Murphy |
| 2020 | AMIA | Generative Transfer Learning for Measuring Plausibility of EHR Diagnosis Records Over Time. | Hossein Estiri, Sebastien Vasey, Jeffrey G. Klann, Victor M. Castro, Shawn N. Murphy |
| 2020 | AMIA | Informatics for Integrating Biology and the Bedside (i2b2) in 2020: Supporting Large Ontologies and REDcap Surveys. | Jeffrey G. Klann, Michael Mendis, Diane Keogh, Shawn N. Murphy |
| 2020 | AMIA | National Informatics Infrastructure Responding to the COVID-19 Pandemic. | Douglas MacFadden, Shawn N. Murphy, Griffin M. Weber, Anupama Maram |
| 2020 | AMIA | High-throughput Phenotyping with EHR Sequences. | Shawn N. Murphy, Hossein Estiri, Zachary H. Strasser, Kavishwar B. Wagholikar, Victor M. Castro |
| 2020 | AMIA | HistoriView: An Interactive and Scalable Visual Exploratory Plugin for Longitudinal Patient Data Review. | Heekyong Park, Taowei David Wang, Vivian S. Gainer, Victor M. Castro, Nich Wattanasin, Shawn N. Murphy |
| 2019 | AMIA | sureLDA: A Novel Multi-Disease Automated Phenotyping Method for the Electronic Health Record. | Yuri Ahuja, Doudou Zhou, Zeling He, Jiehuan Sun, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, Chuan Hong, Tianxi Cai |
| 2019 | AMIA | EHR Sequencing: A Novel Approach for Constructing Predictive and Interpretable Data Representations from EHR Data. | Hossein Estiri, Thomas H. McCoy, Shawn N. Murphy |
| 2019 | AMIA | Ontologies Enabling Computable Tables. | Jeffrey G. Klann, Nich Wattanasin, Michael Mendis, Matthew A. Joss, Hossein Estiri, Kavishwar B. Wagholikar, Shawn N. Murphy |
| 2019 | AMIA | Patient Stratification Process for enabling Clinical Interventions. | Kavishwar B. Wagholikar, Samuel J. Aronson, Benjamin Morgan Scirica, Akshay S. Desai, Shawn N. Murphy |
| 2019 | AMIA | Dynamic Phenotyping to facilitate Accrual for Prospective Clinical studies: A Case Study in Heart Failure. | Kavishwar B. Wagholikar, Christina M. Fischer, Alyssa P. Goodson, Christopher Herrick, Taylor Maclean, Katelyn Smith, Liliana Fera, Thomas Gaziano, Jacqueline Dunning, Joshua Bosque-Hamilton, Lina Matta, Eloy Toscano, Brent Richter, Layne Ainsworth, Michael Oates, Samuel J. Aronson, Calum A. MacRae, Benjamin Morgan Scirica, Akshay S. Desai, Shawn N. Murphy |
| 2019 | AMIA | Stratification of Patient Population for enabling data-driven Clinical Interventions using I2b2. | Kavishwar B. Wagholikar, Vishal Vernekar, Akshay Zagade, Yuri Ostrovsky, Shek-Wayne Chan, Alyssa P. Goodson, Ameet Pathak, Corey Glynn, Christopher Herrick, Shawn N. Murphy |
| 2019 | AMIA | Scalable Process to Generate Aggregated Patient Data for Analysis. | Nich Wattanasin, Taowei David Wang, Vivian S. Gainer, Shawn N. Murphy |
| 2019 | AMIA | Plugin for importing spreadsheets into Informatics for Integrating Biology and the Bedside platform. | Akshay Zagade, Vishal Vernekar, Shek-Wayne Chan, Kavishwar B. Wagholikar, Rupendra Chulyadyo, Yuri Ostrovsky, Alyssa P. Goodson, Ameet Pathak, Christopher Herrick, Shawn N. Murphy |
| 2018 | AMIA | Using HL7 FHIR to Improve Standardization and Interoperability of Common Data Models for Clinical and Translational Research. | Guoqian Jiang, Jon D. Duke, Daniella Meeker, Mitra Rocca, Harold R. Solbrig, Shawn N. Murphy |
| 2018 | AMIA | Accessible Research Commons for Health: Four Years Into the PCORnet Journey. | Jeffrey G. Klann, Stanley Boykin, Marc D. Natter, Margaret Vella, Douglas MacFadden, Sarah R. Weiler, Sebastian Schneeweiss, Kenneth D. Mandl, Shawn N. Murphy |
| 2018 | AMIA | High-Throughput Multimodal Automated Phenotyping (MAP) Incorporating Natural Language Processing with Application to PheWAS. | Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell, Lauren Costa, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, John Michael Gaziano, Kelly Cho, Peter Szolovits, Isaac S. Kohane, Sheng Yu, Tianxi Cai |
| 2018 | AMIA | Automated Population of an i2b2 Clinical Data Warehouse using FHIR. | Harold R. Solbrig, Na Hong, Shawn N. Murphy, Guoqian Jiang |
| 2017 | AMIA | Applying unsupervised learning to characterize rare observations in clinical data: the DQe-p tool. | Hossein Estiri, Jeffrey G. Klann, Kavishwar B. Wagholikar, Shawn N. Murphy |
| 2017 | AMIA | Integrating Patient Registries into Enterprise wide Patient-Discovery Strategies. | Christopher Herrick, Alyssa P. Goodson, Wayne Chan, Lori C. Phillips, Michael Mendis, Shawn N. Murphy |
| 2017 | AMIA | Reuse of PCORnet Data to Support the Precision Medicine Initiative: Data Model Harmonization. | Jeffrey G. Klann, Matthew A. Joss, Kevin Embree, Shawn N. Murphy |
| 2017 | AMIA | Web-Service-Enabled Apps for Research: SMART-on-FHIR for OMOP and PCORNet. | Jeffrey G. Klann, Kavishwar B. Wagholikar, Lori C. Phillips, Matthew A. Joss, Shawn N. Murphy |
| 2017 | AMIA | Building Better Timeline Interactions for Patient Chart Reviews. | Heekyong Park, Taowei David Wang, Vivian S. Gainer, Victor M. Castro, Shawn N. Murphy |
| 2017 | AMIA | High-throughput Phenotyping via Denoised Normal Mixture Transformation. | Sheng Yu, Yumeng Ma, Jessica L. Gronsbell, Katherine P. Liao, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai |
| 2016 | AMIA | Comparison of Data Models used in Research Data Repositories for Electronic Phenotyping. | Jeffrey G. Klann, Vijay A. Raghavan, Michael Mendis, Douglas MacFadden, Sarah R. Weiler, Kenneth D. Mandl, Shawn N. Murphy |
| 2016 | AMIA | Data Topography of a Large Multi-Site Research Network. | Jeffrey G. Klann, Vijay A. Raghavan, Douglas MacFadden, Sarah R. Weiler, Kenneth D. Mandl, Shawn N. Murphy |
| 2016 | AMIA | Cajun Codefest 4.0 on SMART-on-FHIR apps for Diabetes. | Kavishwar B. Wagholikar, Rahul Jain, Eliel Oliveira, Henry Chu, Harshal Shah, Joshua C. Mandel, Jeffrey G. Klann, Sohail Rao, Kenneth D. Mandl, Shawn N. Murphy, Thomas Carton |
| 2016 | AMIA | Evaluation of SMART-on-FHIR I2b2 cell using PCORNET data model. | Kavishwar B. Wagholikar, Rahul Jain, Eliel Oliveira, Joshua C. Mandel, Jeffrey G. Klann, Prasad Patil, Kenneth D. Mandl, Shawn N. Murphy, Thomas Carton |
| 2016 | AMIA | Export data from i2b2 using the new download data web client plugin. | Nich Wattanasin, Taowei David Wang, Bhaswati Ghosh, Reeta Metta, Vivian S. Gainer, Shawn N. Murphy |
| 2015 | AMIA | Demonstrating the Advantages of Applying Data Mining Techniques on Time-Dependent Electronic Medical Records. | Uri Kartoun, Vishesh Kumar, Su-Chun Cheng, Sheng Yu, Katherine P. Liao, Elizabeth W. Karlson, Ashwin N. Ananthakrishnan, Zongqi Xia, Vivian S. Gainer, Andrew Cagan, Guergana Savova, Pei J. Chen, Shawn N. Murphy, Susanne E. Churchill, Isaac S. Kohane, Peter Szolovits, Tianxi Cai, Stanley Y. Shaw |
| 2015 | AMIA | The Scalable Collaborative Infrastructure for a Learning Health System. | Jeffrey G. Klann, Marc D. Natter, Douglas MacFadden, Sarah Weiler, Kenneth D. Mandl, Shawn N. Murphy |
| 2015 | AMIA | The Scalable Collaborative Infrastructure for a Learning Health System: Facilitating Agile Comparative Effectiveness Research. | Jeffrey G. Klann, Marc D. Natter, Douglas MacFadden, Sarah Weiler, Kenneth D. Mandl, Shawn N. Murphy |
| 2015 | AMIA | Supporting Multi-sourced Medication Information in i2b2. | Jeffrey G. Klann, Pascal B. Pfiffner, Marc D. Natter, Emily Conner, Paul Blazejewski, Shawn N. Murphy, Kenneth D. Mandl |
| 2015 | AMIA | SCILHS Data Mart Creation Plugin. | Michael Mendis, Janice Donahoe, Jeffrey G. Klann, Vijay A. Raghavan, Lori C. Phillips, Alexander Turchin, Shawn N. Murphy |
| 2015 | AMIA | Computable Phenotypes enabled by the i2b2 Validation Platform. | Shawn N. Murphy, Vivian S. Gainer, Victor M. Castro, Alyssa P. Goodson, Lori C. Phillips, Sheng Yu, Tianxi Cai |
| 2015 | AMIA | (Authoring) Rules, (Distributed Query) Tools, and Drools: The challenging new world of high throughput phenotyping. | Jennifer A. Pacheco, Abel N. Kho, Jyotishman Pathak, Joshua C. Denny, Shawn N. Murphy |
| 2014 | AMIA | Integrating Information from Unstructured Text with Structured Clinical Data from an Electronic Medical Record to Improve Patient Cohort Identification. | Victor M. Castro, Sergey Goryachev, Christopher Herrick, Vivian S. Gainer, Martin Rees, Shawn N. Murphy |
| 2014 | AMIA | Enabling Patient-Centric Comparative Effectiveness Research in i2b2. | Jeffrey G. Klann, Lori C. Phillips, Kenneth D. Mandl, Shawn N. Murphy |
| 2014 | AMIA | Handling Clinical and Next Generation Sequencing data: new strategies in i2b2 and tranSMART. | Shawn N. Murphy, Riccardo Bellazzi, Matteo Gabetta, Paul Avillach, Lori C. Phillips |
| 2014 | AMIA | Informatics for Integrating Biology and the Bedside (I2b2) Clinical Trials (CT) Patient Ascertainment Suite. | Shawn N. Murphy, Nich Wattanasin, Susanne E. Churchill, Isaac S. Kohane, Vivian S. Gainer |
| 2014 | AMIA | Improving the Review of Individual Patients in a Clinical Data Repository. | Nich Wattanasin, Michael Mendis, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy |
| 2013 | AMIA | Query Health: One Step Toward a Learning Health System. | Jeffrey G. Klann, Michael D. Buck, Jeffrey S. Brown, Shawn N. Murphy, Douglas B. Fridsma |
| 2013 | AMIA | Using SMART and i2b2 to Efficiently Identify Adverse Events. | Jeffrey G. Klann, Rachel L. Ramoni, Shawn N. Murphy |
| 2013 | AMIA | Amassing Pediatric Brain MRI's to Understand "Normal" using Mi2b2. | Shawn N. Murphy, Christopher Herrick, Victor M. Castro, Randy L. Gollub, Nathaniel Reynolds, Patricia Ellen Grant |
| 2013 | AMIA | Organization and Transformation of Next-Generation Sequencing Data for Use within i2b2. | Lori C. Phillips, Shawn N. Murphy, Isaac S. Kohane |
| 2013 | AMIA | Integrating the CCDA for Real-Time Patient Data in the i2b2 Platform. | Nich Wattanasin, Michael Mendis, Joshua C. Mandel, Rachel B. Ramoni, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy |
| 2013 | AMIA | Research Informatics : Re-engineering the Research Enterprise. | Mark G. Weiner, Philip R. O. Payne, Peter J. Emb, Shawn N. Murphy |
| 2012 | AMIA | Data Sharing: Incentives and Governance Issues in Industry and Academia. | Suzanne Bakken, Michael N. Cantor, Shawn N. Murphy, Lisa M. Schilling |
| 2012 | AMIA | Implementing a pharmacovigilance framework using data from electronic medical records. | Victor M. Castro, Vivian S. Gainer, Christopher Herrick, Shawn N. Murphy, Wannapa Kay Mahamaneerat |
| 2012 | AMIA | Query Health and i2b2: Enabling Standards-based, Multiplatform Population Health Queries. | Jeffrey G. Klann, Shawn N. Murphy |
| 2012 | AMIA | The Medical App Store, Research Data Repositories, and Physician Cognitive Overload: Uniting Three Large, Multisite Grants for Health Care Transformation. | Jeffrey G. Klann, Adam Wright, Allison B. McCoy, Shawn N. Murphy |
| 2012 | AMIA | Building the SMART Platforms Ecosystem: Toward an Apps-Based Health Information Economy. | Kenneth D. Mandl, Brian D. Athey, Daniel S. Fritsch, Shawn N. Murphy, Will Ross |
| 2012 | AMIA | Supporting Population Queries and Clinical Trials in i2b2 with SMART. | Shawn N. Murphy, Michael Mendis, Nich Wattanasin, Alyssa Porter, Stella Ubaha, Lori C. Phillips, Joshua C. Mandel, Rachel L. Ramoni, Kenneth D. Mandl, Isaac S. Kohane |
| 2012 | AMIA | Rethinking the "Honest Broker" in the Changing Face of Security and Privacy. | Luke V. Rasmussen, Brian D. Athey, Andrew D. Boyd, Bradley A. Malin, Shawn N. Murphy |
| 2012 | AMIA | Apps to display patient data, making SMART available in the i2b2 platform. | Nich Wattanasin, Alyssa Porter, Stella Ubaha, Michael Mendis, Lori C. Phillips, Joshua C. Mandel, Rachel L. Ramoni, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy |
| 2012 | AMIA | Integrating Substitutable Medical Apps, Reusable Technologies (SMART) in the i2b2 Platform. | Nich Wattanasin, Alyssa Porter, Stella Ubaha, Michael Mendis, Lori C. Phillips, Joshua C. Mandel, Rachel L. Ramoni, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy |
| 2009 | GECCO | A PSO/ACO approach to knowledge discovery in a pharmacovigilance context. | Margarita Sordo, Gabriela Ochoa, Shawn N. Murphy |
| 2008 | CHI | Aligning temporal data by sentinel events: discovering patterns in electronic health records. | Taowei David Wang, Catherine Plaisant, Alexander J. Quinn, Roman Stanchak, Shawn N. Murphy, Ben Shneiderman |
| 2007 | AMIA | Architecture of the Open-source Clinical Research Chart from Informatics for Integrating Biology and the Bedside. | Shawn N. Murphy, Michael Mendis, Kristel Hackett, Rajesh Kuttan, Wensong Pan, Lori C. Phillips, Vivian S. Gainer, David Berkowicz, John P. Glaser, Isaac S. Kohane, Henry C. Chueh |
| 2006 | AMIA | Mapping Tool for Maintaining Vocabulary Relationships. | Kristel Hackett, Isaac S. Kohane, Henry C. Chueh, Shawn N. Murphy |
| 2006 | AMIA | Integration of Clinical and Genetic Data in the i2b2 Architecture. | Shawn N. Murphy, Michael Mendis, David A. Berkowitz, Isaac S. Kohane, Henry C. Chueh |
| 2006 | AMIA | A Web Portal that Enables Collaborative Use of Advanced Medical Image Processing and Informatics Tools through the Biomedical Informatics Research Network (BIRN). | Shawn N. Murphy, Michael Mendis, Jeffrey S. Grethe, Randy L. Gollub, David N. Kennedy, Bruce R. Rosen |
| 2006 | AMIA | Calculating the Benefits of a Research Patient Data Repository. | Ruth Nalichowski, Diane Keogh, Henry C. Chueh, Shawn N. Murphy |
| 2005 | AMIA | Concept-Value Pair Extraction from Semi-Structured Clinical Narrative: A Case Study Using Echocardiogram Reports. | Jeanhee Chung, Shawn N. Murphy |
| 2003 | AMIA | A Visual Interface Designed for Novice Users to find Research Patient Cohorts in a Large Biomedical Database. | Shawn N. Murphy, Vivian S. Gainer, Henry C. Chueh |
| 2002 | AMIA | A security architecture for query tools used to access large biomedical databases. | Shawn N. Murphy, Henry C. Chueh |
| 2001 | AMIA | Visual Query Tool for Integrating Clinical and Genetic Data in the Partners Healthcare System. | Shawn N. Murphy, Henry C. Chueh |
| 2000 | AMIA | Visual query tool for finding patient cohorts from a clinical data warehouse of the partners HealthCare system. | Shawn N. Murphy, G. Octo Barnett, Henry C. Chueh |
| 1999 | AMIA | Deriving Patient Profiles from Clinical Repositories. | Rajneesh Behal, Shawn N. Murphy, G. Octo Barnett, Henry C. Chueh |
| 1999 | AMIA | Optimizing healthcare research data warehouse design through past COSTAR query analysis. | Shawn N. Murphy, Mary Morgan, G. Octo Barnett, Henry C. Chueh |
| 1998 | AMIA | Using web technology and Java mobile software agents to manage outside referrals. | Shawn N. Murphy, T. Ng, Dean F. Sittig, G. Octo Barnett |
| 1997 | AMIA | Puya: a method of attracting attention to relevant physical findings. | W. D. de Estrada, Shawn N. Murphy, G. Octo Barnett |
| 1997 | AMIA | Using software agents to maintain autonomous patient registries for clinical research. | Shawn N. Murphy, Usman Rabbani, G. Octo Barnett |