| 2025 | CIBCB | Let's Talk 'Bout Mutation: Evolutionary Programming for DNA Sequences. | James Sargant, Michael Dub, Sheridan K. Houghten, Steffen Graether |
| 2024 | CEC | Promoting Diversity in the Evolution of Biological Sequence Data. | Michael Dub, Sheridan K. Houghten, Steffen P. Graether |
| 2024 | CIBCB | Driving Evolution Towards Discovery of Patterns in Sets of Weakly-Conserved DNA Sequences. | Michael Dub, Sheridan K. Houghten, Steffen P. Graether |
| 2024 | CIBCB | Generating Models of Human Gait in Patients with Parkinson's Disease using Genetic Programming. | Tristan Navikevicius, Lgia Reis Nbrega, Sheridan K. Houghten, Adriano de Oliveira Andrade, Adriano Alves Pereira |
| 2024 | CIBCB | Immunity Vanishing Act: Epidemic Variant and Immunity Analysis via Evolutionary Computation. | Farhana Yasmeen, Michael Dub, Sheridan K. Houghten |
| 2023 | CIBCB | Comparison of Representations to Evolve Weighted Contact Networks with Epidemic Properties. | Michael Dub, James Sargant, Sheridan K. Houghten |
| 2023 | CIBCB | From Bits to Bases: Evolving a Versatile Construct for Biological Sequence and Network Data. | Michael Dub, James Sargant, Sheridan K. Houghten, Steffen Graether |
| 2022 | CEC | Now I Know My Alpha, Beta, Gammas: Variants in an Epidemic Scheme. | Michael Dub, Sheridan K. Houghten |
| 2022 | CEC | Evolving Weighted Contact Networks for Epidemic Modeling: the Ring and the Power. | James Sargant, Sheridan K. Houghten, Michael Dub |
| 2022 | CIBCB | Classification of Parkinson's Disease Patients and Effectiveness of Medication for Freezing of Gait. | Omid Mohamad Beigi, Lgia Reis Nbrega, Sheridan K. Houghten, Adriano de Oliveira Andrade, Adriano Alves Pereira |
| 2022 | CIBCB | Evaluation of Frameworks for Epidemic Variants and Infectivity using an Evolutionary Algorithm. | Michael Dub, Sheridan K. Houghten |
| 2022 | CIBCB | Evolving Lockdown Strategies to Minimize Infections in an Epidemic. | James Sargant, Michael Dub, Sheridan K. Houghten |
| 2021 | CEC | Weighting on the World to Change... an Epidemic. | Rodrigo Vega Jimenez, Michael Dub, Sheridan K. Houghten, James Alexander Hughes |
| 2021 | CEC | Evaluation of Communities from Exploratory Evolutionary Compression of Weighted Graphs. | Emilia Rutkowski, James Sargant, Sheridan K. Houghten, Joseph Alexander Brown |
| 2021 | CIBCB | Vaccinating a Population is a Changing Programming Problem. | Sumaiya Amin, Sheridan K. Houghten, James Alexander Hughes |
| 2021 | CIBCB | One Moose, Two Moose, Three Fields, More? | Daniel A. Ashlock, Joseph Alexander Brown, Sheridan K. Houghten, Munir Makhmutov |
| 2021 | CIBCB | Identification of Genes Associated with Alzheimer's Disease using Evolutionary Computation. | Guangyao Chen, James Sargant, Sheridan K. Houghten, Tyler Kennedy Collins |
| 2020 | CEC | Evolutionary Graph Compression and Diffusion Methods for City Discovery in Role Playing Games. | Joseph Alexander Brown, Daniel A. Ashlock, Sheridan K. Houghten, Angelo Romualdo |
| 2020 | CEC | Modelling of Vaccination Strategies for Epidemics using Evolutionary Computation. | Michael Dub, Sheridan K. Houghten, Daniel A. Ashlock |
| 2020 | CEC | Gait Model Analysis of Parkinson's Disease Patients under Cognitive Load. | James Alexander Hughes, Sheridan K. Houghten, Joseph Alexander Brown |
| 2020 | CEC | Cryptanalysis of RSA: Integer Prime Factorization Using Genetic Algorithms. | Emilia Rutkowski, Sheridan K. Houghten |
| 2020 | CIBCB | Effective Side Effect Machines for Decoding. | Sharnendu Banik, Sheridan K. Houghten |
| 2020 | CIBCB | Evolving the Curve. | Michael Dub, Sheridan K. Houghten, Daniel A. Ashlock, James Alexander Hughes |
| 2020 | CIBCB | Vaccinating a Population is a Programming Problem. | James Alexander Hughes, Michael Dub, Sheridan K. Houghten, Daniel A. Ashlock |
| 2020 | CIBCB | Using Genetic Programming to Investigate a Novel Model of Resting Energy Expenditure for Bariatric Surgery Patients. | James Alexander Hughes, Ryan E. R. Reid, Sheridan K. Houghten, Ross E. Andersen |
| 2020 | CIBCB | Extracting Information from Weighted Contact Networks via Genetic Algorithms. | Emilia Rutkowski, Sheridan K. Houghten, Joseph Alexander Brown |
| 2019 | CEC | Representation for Evolution of Epidemic Models. | Michael Dub, Sheridan K. Houghten, Daniel A. Ashlock |
| 2019 | CIBCB | Pandemic: A Graph Evolution Story. | Michael Dub, Sheridan K. Houghten, Daniel A. Ashlock |
| 2019 | CIBCB | Compression of Biological Networks using a Genetic Algorithm with Localized Merge. | Sheridan K. Houghten, Angelo Romualdo, Tyler Kennedy Collins, Joseph Alexander Brown |
| 2019 | CIBCB | Descriptive Symbolic Models of Gaits from Parkinson's Disease Patients. | James Alexander Hughes, Sheridan K. Houghten, Joseph Alexander Brown |
| 2018 | CIBCB | Parameter selection for modeling of epidemic networks. | Michael Dub, Sheridan K. Houghten, Daniel A. Ashlock |
| 2018 | CIBCB | Edit metric decoding: Return of the side effect machines. | Sheridan K. Houghten, Tyler Kennedy Collins, James Alexander Hughes, Joseph Alexander Brown |
| 2018 | CIBCB | A deep learning pipeline to classify different stages of Alzheimer's disease from fMRI data. | Yosra Kazemi, Sheridan K. Houghten |
| 2018 | CIBCB | Hierarchical clustering and tree stability. | Amanda Saunders, Daniel A. Ashlock, Sheridan K. Houghten |
| 2017 | CEC | Genetic programming for improved cryptanalysis of elliptic curve cryptosystems. | Tim Ribaric, Sheridan K. Houghten |
| 2017 | CIBCB | Hybridization and ring optimization for larger sets of embeddable biomarkers. | Daniel A. Ashlock, Sheridan K. Houghten |
| 2017 | CIBCB | Single-objective and multi-objective genetic algorithms for compression of biological networks. | Tyler Kennedy Collins, Adel Zakirov, Joseph Alexander Brown, Sheridan K. Houghten |
| 2017 | CIBCB | Evaluation of the salmon algorithm. | John Orth, Sheridan K. Houghten, Lindsey Tulloch |
| 2016 | CEC | A methodology for disease gene association using centrality measures. | Ashkan Entezari Heravi, Sheridan K. Houghten |
| 2016 | CIBCB | Evolving graph compression using similarity measures for bioinformatics applications. | Joseph Alexander Brown, Sheridan K. Houghten, Tyler Kennedy Collins, Qiang Qu |
| 2015 | CIBCB | Lexicode crossover for embeddable biomarkers. | Daniel A. Ashlock, Sheridan K. Houghten |
| 2015 | CIBCB | Evolutionary computation for disease gene association. | Ashkan Entezari Heravi, Koosha Tahmasebipour, Sheridan K. Houghten |
| 2014 | BIBE | Effect of Multi-K Contig Merging in de novo DNA Assembly. | Mohammad Goodarzi, Sheridan K. Houghten, Ping Liang |
| 2014 | BIBE | Disease-Gene Association Using a Genetic Algorithm. | Koosha Tahmasebipour, Sheridan K. Houghten |
| 2014 | CIBCB | Recentering and Restarting Genetic Algorithm variations for DNA Fragment Assembly. | James Alexander Hughes, Sheridan K. Houghten, Guillermo M. Malln-Fullerton, Daniel A. Ashlock |
| 2014 | CIBCB | Modeling metal protein complexes from experimental extended X-ray absorption fine structure using evolutionary algorithms. | Collin Price, Sheridan K. Houghten, Sergei Vassiliev, Doug Bruce |
| 2013 | CEC | Edit metric decoding: Representation strikes back. | James Alexander Hughes, Joseph A. Brown, Sheridan K. Houghten, Daniel A. Ashlock |
| 2012 | CIBCB | A multi-objective genetic algorithm with side effect machines for motif discovery. | Farhad Alizadeh Noori, Sheridan K. Houghten |
| 2012 | GECCO | Evolutionary approaches to the generation of optimal error correcting codes. | Daniel E. McCarney, Sheridan K. Houghten, Brian J. Ross |
| 2011 | CEC | Autogeneration of fractal photographic mosaic images. | Joseph A. Brown, Daniel A. Ashlock, John Orth, Sheridan K. Houghten |
| 2011 | CIBCB | Optimizing the Salmon Algorithm for the construction of DNA error-correcting codes. | John Orth, Sheridan K. Houghten |
| 2010 | CIBCB | Side effect machines for quaternary edit metric decoding. | Joseph A. Brown, Sheridan K. Houghten, Daniel A. Ashlock |
| 2009 | CIBCB | DNA error correcting codes: No crossover. | Daniel A. Ashlock, Sheridan K. Houghten |
| 2005 | CIBCB | A Novel Variation Operator for More Rapid Evolution of DNA Error Correcting Codes. | Daniel A. Ashlock, Sheridan K. Houghten |