| 2025 | WACV | EFFICIENTMORPH: Parameter-Efficient Transformer-Based Architecture for 3D Image Registration. | Abu Zahid Bin Aziz, Mokshagna Sai Teja Karanam, Tushar Kataria, Shireen Y. Elhabian |
| 2024 | ICLR | Point2SSM: Learning Morphological Variations of Anatomies from Point Clouds. | Jadie Adams, Shireen Y. Elhabian |
| 2024 | MICCAI | Weakly Supervised Bayesian Shape Modeling from Unsegmented Medical Images. | Jadie Adams, Krithika Iyer, Shireen Y. Elhabian |
| 2024 | MICCAI | Deformable Vertebra 3D/2D Registration from Biplanar X-Rays Using Particle-Based Shape Modelling. | Benjamin Aubert, Nawazish Khan, Francis Toupin, Manuela Pacheco, Alan Morris, Shireen Y. Elhabian, Kongbin Kang |
| 2024 | MICCAI | Estimation and Analysis of Slice Propagation Uncertainty in 3D Anatomy Segmentation. | Rachaell Nihalaani, Tushar Kataria, Jadie Adams, Shireen Y. Elhabian |
| 2024 | MICCAI | HAMIL-QA: Hierarchical Approach to Multiple Instance Learning for Atrial LGE MRI Quality Assessment. | K. M. Arefeen Sultan, Md. Hasibul Husain Hisham, Benjamin A. Orkild, Alan Morris, Eugene G. Kholmovski, Erik Bieging, Eugene Kwan, Ravi Ranjan, Edward V. R. DiBella, Shireen Y. Elhabian |
| 2024 | MICCAI | MASSM: An End-to-End Deep Learning Framework for Multi Anatomy Statistical Shape Modeling Directly From Images. | Janmesh Ukey, Tushar Kataria, Shireen Y. Elhabian |
| 2023 | MICCAI | Can Point Cloud Networks Learn Statistical Shape Models of Anatomies? | Jadie Adams, Shireen Y. Elhabian |
| 2023 | MICCAI | Fully Bayesian VIB-DeepSSM. | Jadie Adams, Shireen Y. Elhabian |
| 2023 | MICCAI | Benchmarking Scalable Epistemic Uncertainty Quantification in Organ Segmentation. | Jadie Adams, Shireen Y. Elhabian |
| 2023 | MICCAI | Progressive DeepSSM: Training Methodology for Image-To-Shape Deep Models. | Abu Zahid Bin Aziz, Jadie Adams, Shireen Y. Elhabian |
| 2023 | MICCAI | Mesh2SSM: From Surface Meshes to Statistical Shape Models of Anatomy. | Krithika Iyer, Shireen Y. Elhabian |
| 2023 | MICCAI | ADASSM: Adversarial Data Augmentation in Statistical Shape Models from Images. | Mokshagna Sai Teja Karanam, Tushar Kataria, Krithika Iyer, Shireen Y. Elhabian |
| 2023 | MICCAI | To Pretrain or Not to Pretrain? A Case Study of Domain-Specific Pretraining for Semantic Segmentation in Histopathology. | Tushar Kataria, Beatrice Knudsen, Shireen Y. Elhabian |
| 2023 | MICCAI | Image2SSM: Reimagining Statistical Shape Models from Images with Radial Basis Functions. | Hong Xu, Shireen Y. Elhabian |
| 2023 | MICCAI | Particle-Based Shape Modeling for Arbitrary Regions-of-Interest. | Hong Xu, Alan Morris, Shireen Y. Elhabian |
| 2023 | SC | An NSF REU Site Based on Trust and Reproducibility of Intelligent Computation: Experience Report. | Mary W. Hall, Ganesh Gopalakrishnan, Eric Eide, Johanna Cohoon, Jeff M. Phillips, Mu Zhang, Shireen Y. Elhabian, Aditya Bhaskara, Harvey Dam, Artem Yadrov, Tushar Kataria, Amir Mohammad Tavakkoli, Sameeran Joshi, Mokshagna Sai Teja Karanam |
| 2022 | MICCAI | From Images to Probabilistic Anatomical Shapes: A Deep Variational Bottleneck Approach. | Jadie Adams, Shireen Y. Elhabian |
| 2020 | AAAI | Infinite ShapeOdds: Nonparametric Bayesian Models for Shape Representations. | Wei W. Xing, Shireen Y. Elhabian, Robert Michael Kirby, Ross T. Whitaker, Shandian Zhe |
| 2020 | ACCV | dpVAEs: Fixing Sample Generation for Regularized VAEs. | Riddhish Bhalodia, Iain Lee, Shireen Y. Elhabian |
| 2020 | MICCAI | Uncertain-DeepSSM: From Images to Probabilistic Shape Models. | Jadie Adams, Riddhish Bhalodia, Shireen Y. Elhabian |
| 2020 | MICCAI | Combined Estimation of Shape and Pose for Statistical Analysis of Articulating Joints. | Praful Agrawal, Joseph D. Mozingo, Shireen Y. Elhabian, Andrew E. Anderson, Ross T. Whitaker |
| 2020 | MICCAI | Attention-Guided Quality Assessment for Automated Cryo-EM Grid Screening. | Hong Xu, David E. Timm, Shireen Y. Elhabian |
| 2019 | MICCAI | A Cooperative Autoencoder for Population-Based Regularization of CNN Image Registration. | Riddhish Bhalodia, Shireen Y. Elhabian, Ladislav Kavan, Ross T. Whitaker |
| 2018 | MICCAI | DeepSSM: A Deep Learning Framework for Statistical Shape Modeling from Raw Images. | Riddhish Bhalodia, Shireen Y. Elhabian, Ladislav Kavan, Ross T. Whitaker |
| 2018 | MICCAI | On the Evaluation and Validation of Off-the-Shelf Statistical Shape Modeling Tools: A Clinical Application. | Anupama Goparaju, Ibolya Csecs, Alan Morris, Evgueni Kholmovski, Nassir Marrouche, Ross T. Whitaker, Shireen Y. Elhabian |
| 2018 | MICCAI | Mixture Modeling of Global Shape Priors and Autoencoding Local Intensity Priors for Left Atrium Segmentation. | Tim Sodergren, Riddhish Bhalodia, Ross T. Whitaker, Joshua Cates, Nassir Marrouche, Shireen Y. Elhabian |
| 2017 | CVPR | ShapeOdds: Variational Bayesian Learning of Generative Shape Models. | Shireen Y. Elhabian, Ross T. Whitaker |
| 2017 | MICCAI | Learning Deep Features for Automated Placement of Correspondence Points on Ensembles of Complex Shapes. | Praful Agrawal, Ross T. Whitaker, Shireen Y. Elhabian |
| 2016 | MICCAI | Towards a Statistical Shape-Aware Deformable Contour Model for Cranial Nerve Identification. | Sharmin Sultana, Praful Agrawal, Shireen Y. Elhabian, Ross T. Whitaker, Tanweer Rashid, Jason E. Blatt, Justin S. Cetas, Michel A. Audette |
| 2014 | ICIP | Statistical morphable model for human teeth restoration. | Eslam A. Mostafa, Shireen Y. Elhabian, Aly S. Abdelrahim, Salwa Elshazly, Aly A. Farag |
| 2013 | CVPR | Analytic Bilinear Appearance Subspace Construction for Modeling Image Irradiance under Natural Illumination and Non-Lambertian Reflectance. | Shireen Y. Elhabian, Aly A. Farag |
| 2013 | ICIP | A 3D reconstruction of the human jaw from a single image. | Aly S. Abdelrahim, Ahmed Shalaby, Shireen Y. Elhabian, James H. Graham, Aly A. Farag |
| 2012 | CVPR | A passive stereo system for 3D human face reconstruction and recognition at a distance. | Mostafa Abdelrahman, Asem M. Ali, Shireen Y. Elhabian, Ham M. Rara, Aly A. Farag |
| 2012 | CVPR | Fully automated 3D colon segmentation for early detection of colorectal cancer based on convex formulation of the active contour model. | Marwa Ismail, Shireen Y. Elhabian, Aly A. Farag, Gerald W. Dryden, Albert Seow |
| 2012 | ICIP | Occlusal surface reconstruction of human teeth from a single image based on object and sensor physical characteristics. | Aly S. Abdelrahim, Aly A. Farag, Shireen Y. Elhabian, Eslam A. Mostafa, Wael Aboelmaaty |
| 2012 | ICIP | Modeling image irradiance under natural illumination and isotropic surface reflectance. | Shireen Y. Elhabian, Aly A. Farag |
| 2012 | MICCAI | Model-Based Human Teeth Shape Recovery from a Single Optical Image with Unknown Illumination. | Aly A. Farag, Shireen Y. Elhabian, Aly S. Abdelrehim, Wael Aboelmaaty, Allan G. Farman, David Tasman |
| 2011 | BMVC | Towards Efficient and Compact Phenomenological Representation of Arbitrary Bidirectional Surface Reflectance. | Shireen Y. Elhabian, Ham M. Rara, Aly A. Farag |
| 2011 | ICCV | Towards accurate and efficient representation of image irradiance of convex-Lambertian objects under unknown near lighting. | Shireen Y. Elhabian, Ham M. Rara, Aly A. Farag |
| 2011 | ICIP | On the use of hemispherical harmonics for modeling images of objects under unknown distant illumination. | Shireen Y. Elhabian, Ham M. Rara, Aly A. Farag |
| 2011 | ISVC | Solving Geometric Co-registration Problem of Multi-spectral Remote Sensing Imagery Using SIFT-Based Features toward Precise Change Detection. | Mostafa Abdelrahman, Asem M. Ali, Shireen Y. Elhabian, Aly A. Farag |
| 2010 | ICIP | 3D face recovery from intensities of general and unknown lighting using Partial Least Squares. | Ham M. Rara, Shireen Y. Elhabian, Thomas L. Starr, Aly A. Farag |
| 2010 | ICPR | Face Recognition at-a-Distance Using Texture, Dense- and Sparse-Stereo Reconstruction. | Ham M. Rara, Asem M. Ali, Shireen Y. Elhabian, Thomas L. Starr, Aly A. Farag |
| 2010 | ISVC | Feature-Based Lung Nodule Classification. | Amal A. Farag, Asem M. Ali, James H. Graham, Shireen Y. Elhabian, Aly A. Farag, Robert Falk |
| 2010 | ISVC | Surface Modeling of the Corpus Callosum from MRI Scans. | Ahmed A. Farag, Shireen Y. Elhabian, Mostafa Abdelrahman, James H. Graham, Aly A. Farag, Dongqing Chen, Manuel Casanova |
| 2010 | MICCAI | Toward Precise Pulmonary Nodule Descriptors for Nodule Type Classification. | Amal A. Farag, Shireen Y. Elhabian, James H. Graham, Aly A. Farag, Robert Falk |
| 2009 | CVPR | Face recognition at-a-distance based on sparse-stereo reconstruction. | Ham M. Rara, Shireen Y. Elhabian, Asem M. Ali, Mike Miller, Thomas L. Starr, Aly A. Farag |
| 2009 | ICIP | Distant face recognition based on sparse-stereo reconstruction. | Ham M. Rara, Shireen Y. Elhabian, Asem M. Ali, Mike Miller, Thomas L. Starr, Aly A. Farag |
| 2009 | ICIP | Model-based shape recovery from single images of general and unknown lighting. | Ham M. Rara, Shireen Y. Elhabian, Thomas L. Starr, Aly A. Farag |
| 2009 | ISVC | A Framework for Long Distance Face Recognition Using Dense - and Sparse-Stereo Reconstruction. | Ham M. Rara, Shireen Y. Elhabian, Asem M. Ali, Travis R. Gault, Mike Miller, Thomas L. Starr, Aly A. Farag |
| 2008 | ISVC | Noise Analysis of a SFS Algorithm Formulated under Various Imaging Conditions. | Amal A. Farag, Shireen Y. Elhabian, Abdelrehim H. Ahmed, Aly A. Farag |