| 2011 | ICONIP | Analysis of the Proton Mediated Feedback Signals in the Outer Plexiform Layer of Goldfish Retina. | Nilton Liuji Kamiji, Masahiro Yamada, Kazunori Yamamoto, Hajime Hirasawa, Makoto Kurokawa, Shiro Usui |
| 2010 | ICONIP | Efficient Representation by Horizontal Connection in Primary Visual Cortex. | Hiroaki Sasaki, Shunji Satoh, Shiro Usui |
| 2009 | ICONIP | A Next Generation Modeling Environment PLATO: Platform for Collaborative Brain System Modeling. | Shiro Usui, Keiichiro Inagaki, Takayuki Kannon, Yoshimi Kamiyama, Shunji Satoh, Nilton Liuji Kamiji, Yutaka Hirata, Akito Ishihara, Hayaru Shouno |
| 2009 | ICONIP | RAST: A Related Abstract Search Tool. | Shiro Usui, Nilton Liuji Kamiji, Tatsuki Taniguchi, Naonori Ueda |
| 2007 | ICONIP | Development of Invertebrate Brain Platform: Management of Research Resources for Invertebrate Neuroscience and Neuroethology. | Hidetoshi Ikeno, Ryohei Kanzaki, Hitoshi Aonuma, Masakazu Takahata, Makoto Mizunami, Kouji Yasuyama, Nobuyuki Matsui, Fumio Yokohari, Shiro Usui |
| 2007 | ICONIP | Computational Understanding and Modeling of Filling-In Process at the Blind Spot. | Shunji Satoh, Shiro Usui |
| 2007 | ICONIP | Engineering-Approach Accelerates Computational Understanding of V1-V2 Neural Properties. | Shunji Satoh, Shiro Usui |
| 2007 | ICONIP | Neuro-Imaging Platform for Neuroinformatics. | Ryoji Suzuki, Kazuhisa Niki, Norio Fujimaki, Shinobu Masaki, Kazuhisa Ichikawa, Shiro Usui |
| 2007 | ICONIP | Japanese Neuroinformatics Node and Platforms. | Shiro Usui, Teiichi Furuichi, Hiroyoshi Miyakawa, Hidetoshi Ikeno, Soichi Nagao, Toshio Iijima, Yoshimi Kamiyama, Tadashi Isa, Ryoji Suzuki, Hiroshi Ishikane |
| 2007 | IJCNN | A Neuroinformatics Platform for Vision Science: Visiome. | Shiro Usui |
| 2007 | IJCNN | 3D-SE Viewer: A Text Mining Tool based on Bipartite Graph Visualization. | Shiro Usui, Antoine Naud, Naonori Ueda, Tatsuki Taniguchi |
| 2007 | IDEAL | Exploration of a Text Collection and Identification of Topics by Clustering. | Antoine Naud, Shiro Usui |
| 2006 | IJCNN | Extracting Keywords from Research Abstracts for the Neuroinformatics Platform Index Tree. | Shiro Usui, Paulito P. Palmes, Kazunori Nagata, Tatsuki Taniguchi, Naonori Ueda |
| 2006 | ISAIM | Efficient First Order Superlinear Algorithms. | Peter Gczy, Shotaro Akaho, Shiro Usui |
| 2005 | ICNC | Invasive Connectionist Evolution. | Paulito P. Palmes, Shiro Usui |
| 2005 | ICNC | Japanese Neuroinformatics Research: Current Status and Future Research Program of J-Node. | Shiro Usui |
| 2004 | ICMLA | Effective dynamic sample selection algorithm. | Peter Gczy, Shiro Usui |
| 2004 | ICONIP | The Influence of Gaussian, Uniform, and Cauchy Perturbation Functions in the Neural Network Evolution. | Paulito P. Palmes, Shiro Usui |
| 2004 | IJCNN | Japanese Neuroinformatics Project in Vision and RIKEN Brain Science Institute. | Shiro Usui, Shun-ichi Amari |
| 2003 | GECCO | SEPA: Structure Evolution and Parameter Adaptation in Feed-Forward Neural Networks. | Paulito P. Palmes, Taichi Hayasaka, Shiro Usui |
| 2003 | IJCNN | Evolution and adaptation of neural networks. | Paulito P. Palmes, Taichi Hayasaka, Shiro Usui |
| 2001 | IWANN | Analysis on the Viewpoint Dependency in 3-D Object Recognition by Support Vector Machines. | Taichi Hayasaka, Eiichi Ohnishi, Shigeki Nakauchi, Shiro Usui |
| 2000 | IJCNN | On the Problem in Model Selection of Neural Network Regression in Overrealizable Scenario. | Katsuyuki Hagiwara, Kazuhiro Kuno, Shiro Usui |
| 1999 | IJCNN | Computational explanations for color transparency. | Shigeki Nakauchi, Shiro Usui, Jussi Parkkinen, Pertti Silfsten |
| 1998 | ICONIP | Ionic Current Model of Rabbit Retinal Horizontal Cell. | Toshihiro Aoyama, Yoshimi Kamiyama, Shiro Usui, Roman Blanco, Pedro de la Villa, Cecilia F. Vaquero |
| 1998 | ICONIP | Theoretical Concept of Network Pruning Based on Functional Convergence. | Peter Gczy, Shiro Usui |
| 1998 | ICONIP | Theoretical Analysis and Classification of Training Problem in Neural Networks. | Peter Gczy, Shiro Usui |
| 1998 | ICONIP | Deterministic Approach to Dynamic Sample Selection. | Peter Gczy, Shiro Usui |
| 1998 | ICONIP | Upper Bounds on the Expected Training Errors of Neural Networks Regressions for a Gaussian Noise. | Katsuyuki Hagiwara, Kazuhiro Kuno, Shiro Usui |
| 1998 | ICONIP | Trend of a Present Color Management Technology in the Industry. | Tetsuo Iga, Yoshifumi Arai, Shiro Usui |
| 1997 | ICONIP | Rule Extraction from Trained Artificial Neural Networks. | Peter Gczy, Shiro Usui |
| 1997 | ICONIP | On the Model Selection for Linear Combination of Step-Type Basis Functions. | Taichi Hayasaka, Katsuyuki Hagiwara, Naohiro Toda, Shiro Usui |
| 1997 | ICONIP | Color Gamut Mapping Based on Mutual Color Conversion by Neural Networks. | Shigeki Nakauchi, Shiro Usui |
| 1997 | ICONIP | An Efficient Algorithm for Estimating Higher-Order Spectra of Time Series Based on Neural Network Auto-Regressive Model. | Naohiro Toda, Shiro Usui |
| 1997 | ICONIP | Color Management Using Neural Networks. | Shiro Usui, Yoshifumi Arai, Shigeki Nakauchi |
| 1990 | IJCNN | Reconstruction of Munsell color space by a five-layered neural network. | Shiro Usui, Shigeki Nakauchi, Masae Nakano |
| 1986 | ICASSP | Structural identification algorithms of nonlinear systems using volterra functional series. | Kazuyuki Murase, Shiro Usui, Naohiro Toda |