| 2019 | ACSAC | SecDATAVIEW: a secure big data workflow management system for heterogeneous computing environments. | Saeid Mofrad, Ishtiaq Ahmed, Shiyong Lu, Ping Yang, Heming Cui, Fengwei Zhang |
| 2019 | BigData | LPOD: A Local Path Based Optimized Scheduling Algorithm for Deadline-Constrained Big Data Workflows in the Cloud. | Changxin Bai, Shiyong Lu, Ishtiaq Ahmed, Dunren Che, Aravind Mohan |
| 2018 | BigData | Diagnosis Recommendation Using Machine Learning Scientific Workflows. | Ishtiaq Ahmed, Shiyong Lu, Changxin Bai, Fahima Amin Bhuyan |
| 2018 | ISCA | A comparison study of intel SGX and AMD memory encryption technology. | Saeid Mofrad, Fengwei Zhang, Shiyong Lu, Weidong Shi |
| 2016 | BigData | A NoSQL Data Model for Scalable Big Data Workflow Execution. | Aravind Mohan, Mahdi Ebrahimi, Shiyong Lu, Alexander Kotov |
| 2016 | ECIR | Feedback or Research: Separating Pre-purchase from Post-purchase Consumer Reviews. | Mehedi Hasan, Alexander Kotov, Aravind Mohan, Shiyong Lu, Paul M. Stieg |
| 2015 | BigData | A Big Data Modeling Methodology for Apache Cassandra. | Artem Chebotko, Andrey Kashlev, Shiyong Lu |
| 2015 | SIGIR | Parametric and Non-parametric User-aware Sentiment Topic Models. | Zaihan Yang, Alexander Kotov, Aravind Mohan, Shiyong Lu |
| 2014 | SERVICES | Adapting Medical Image Processing Tasks to a Scalable Scientific Workflow System. | Hajar Hamidian, Shiyong Lu, Satyendra P. Rana, Farshad Fotouhi, Hamid Soltanian-Zadeh |
| 2014 | SERVICES | Devising a Cloud Scientific Workflow Platform for Big Data. | Yong Zhao, Youfu Li, Shiyong Lu, Ioan Raicu, Cui Lin |
| 2013 | SERVICES | Storing, Indexing and Querying Large Provenance Data Sets as RDF Graphs in Apache HBase. | Artem Chebotko, John Abraham, Pearl Brazier, Anthony Piazza, Andrey Kashlev, Shiyong Lu |
| 2010 | ICWS | A Collectional Data Model for Scientific Workflow Composition. | Xubo Fei, Shiyong Lu |
| 2010 | ICWS | Confucius: A Scientific Collaboration System Using Collaborative Scientific Workflows. | Jia Zhang, Daniel Kuc, Shiyong Lu |
| 2009 | ICWS | A MapReduce-Enabled Scientific Workflow Composition Framework. | Xubo Fei, Shiyong Lu, Cui Lin |
| 2009 | ICWS | Collaborative Scientific Workflows. | Shiyong Lu, Jia Zhang |
| 2007 | AINA | Computational Methods for Analysis of Cryptic Recombination in the Performance of Genomic Recombination Detection Software. | Jamal Alhiyafi, Cavitha Sabesan, Shiyong Lu, Melphine Harriott, Deborah Jurczyszyn, Raquel P. Ritchie, Felicitas S. Gonzales, Jeffrey L. Ram |
| 2007 | AINA | Graph Matching Based Authorization Model for Efficient Secure XML Querying. | Seunghan Chang, Artem Chebotko, Shiyong Lu, Farshad Fotouhi |
| 2007 | AINA | Itinerary-Based Access Control for Mobile Tasks in Scientific Workflows. | Zijiang Yang, Shiyong Lu, Ping Yang |
| 2007 | DEXA | XML-to-SQL Query Mapping in the Presence of Multi-valued Schema Mappings and Recursive XML Schemas. | Mustafa Atay, Artem Chebotko, Shiyong Lu, Farshad Fotouhi |
| 2007 | ICCS | A Dataflow-Oriented Atomicity and Provenance System for Pipelined Scientific Workflows. | Liqiang Wang, Shiyong Lu, Xubo Fei, Jeffrey L. Ram |
| 2006 | DASC | Runtime Security Verification for Itinerary-Driven Mobile Agents. | Zijiang Yang, Shiyong Lu, Ping Yang |
| 2006 | GRC | CM-test: An Innovative Divergence Measurement and Its Application in Diabetes Gene Expression Data Analysis. | Lily R. Liang, Shiyong Lu, Yi Lu, Puneet Dhawan, Deepak Kumar |
| 2006 | ICDM | GCA: A Coclustering Algorithm for Thalamo-Cortico-Thalamic Connectivity Analysis. | Cui Lin, Shiyong Lu, Xuwei Liang, Jing Hua |
| 2006 | ICDM | Mining Correlation between Motifs and Gene Expression. | Yi Lu, Shiyong Lu, Adrian E. Platts, Stephen A. Krawetz |
| 2005 | CATA | MetaFinder: A Meta-Search Engine with an Open Architecture. | Chunxia Zhang, Shiyong Lu, Lily R. Liang |
| 2005 | ICDE | Reconstructing XML Subtrees from Relational Storage of XML documents. | Artem Chebotko, Dapeng Liu, Mustafa Atay, Shiyong Lu, Farshad Fotouhi |
| 2004 | CATA | ImageSpace: an Image Ontology Creation and Annotation Tool for the Semantic Web. | Rong Huang, Shiyong Lu, Farshad Fotouhi |
| 2004 | CATA | Annotating Linguistic Data with ImageSpace for the Preservation of Endangered Languages. | Shiyong Lu, Rong Huang, Farshad Fotouhi |
| 2004 | ICDCIT | Querying XML Documents from a Relational Database in the Presence of DTDs. | Manjeet Rege, Izabell Caraconcea, Shiyong Lu, Farshad Fotouhi |
| 2004 | ICSOC | A model for abstract process specification, verification and composition. | Ziyang Duan, Arthur J. Bernstein, Philip M. Lewis, Shiyong Lu |
| 2004 | ICWS | Semantics Based Verification and Synthesis of BPEL4WS Abstract Processes. | Ziyang Duan, Arthur J. Bernstein, Philip M. Lewis, Shiyong Lu |
| 2004 | SAC | FGKA: a Fast Genetic K-means Clustering Algorithm. | Yi Lu, Shiyong Lu, Farshad Fotouhi, Youping Deng, Susan J. Brown |
| 2003 | CATA | ERDraw: An XML-based ER-diagram Drawing and Translation Tool. | Shuyun Xu, Yu Li, Shiyong Lu |
| 2003 | CEC | Evolution based approaches to the preservation of endangered natural languages. | Jeffrey M. Stefan, Robert G. Reynolds, F. Fatouhi, Anthony Aristar, Shiyong Lu, Ming Dong |
| 2003 | ER | A Sufficient and Necessary Condition for the Consistency of XML DTDs. | Shiyong Lu, Yezhou Sun, Mustafa Atay, Farshad Fotouhi |
| 2003 | ER | A New Inlining Algorithm for Mapping XML DTDs to Relational Schemas. | Shiyong Lu, Yezhou Sun, Mustafa Atay, Farshad Fotouhi |
| 2003 | ER | Conceptual Data Models for Engineering Information Modeling and Formal Transformation of EER and EXPRESS-G. | Z. M. Ma, Shiyong Lu, Farshad Fotouhi |
| 2002 | CAINE | A Structured Approach to Trade Negotiation Applications. | Ziyang Duan, Albert Loo, Biswajit Sarkar, Shiyong Lu, Mark Van Loon, Subhra Bose |
| 2000 | ICDE | Semantic Conditions for Correctness at Different Isolation Levels. | Arthur J. Bernstein, Philip M. Lewis, Shiyong Lu |
| 1999 | MASCOTS | Model Checking the Secure Electronic Transaction (SET) Protocol. | Shiyong Lu, Scott A. Smolka |