| 2025 | NCA | A Framework for Detecting Secure Web Traffic Over VPNs: HTTPS and QUIC. | Yuan Tian, Shou-Hsuan Stephen Huang |
| 2025 | SAC | LogBabylon: A Unified Framework for Cross-Log File Integration and Analysis. | Yang Lu, Rabimba Karanjai, Dana Alsagheer, Keshav Kasichainula, Lei Xu, Weidong Shi, Shou-Hsuan Stephen Huang |
| 2024 | NCA | Detecting VPN Traffic in Real-Time with Active Probing. | Yuan Tian, Zechun Cao, Shou-Hsuan Stephen Huang |
| 2022 | HIS | Learning Discriminative Representations for Malware Family Classification. | Ayman El Aassal, Shou-Hsuan Stephen Huang |
| 2022 | HIS | Host-Based Intrusion Detection: A Behavioral Approach Using Graph Model. | Zechun Cao, Shou-Hsuan Stephen Huang |
| 2019 | NSS | Detecting Intruders by User File Access Patterns. | Shou-Hsuan Stephen Huang, Zechun Cao, Calvin E. Raines, Mai N. Yang, Camille Simon |
| 2018 | TrustCom | Detecting Intruders and Preventing Hackers from Evasion by Tor Circuit Selection. | Zechun Cao, Shou-Hsuan Stephen Huang |
| 2017 | AINA | Malicious Apps May Explore a Smartphone's Vulnerability to Detect One's Activities. | Xi Lu, Shou-Hsuan Stephen Huang |
| 2016 | AINA | Detecting Stepping-Stone Intruders by Identifying Crossover Packets in SSH Connections. | Shou-Hsuan Stephen Huang, Hongyang Zhang, Michael Phay |
| 2015 | AINA | Per Connection Server-Side Identification of Connections via Tor. | Andrew Springall, Christopher DeVito, Shou-Hsuan Stephen Huang |
| 2011 | AINA | Detecting Intruders Using a Long Connection Chain to Connect to a Host. | Wei Ding, Shou-Hsuan Stephen Huang |
| 2011 | ICPADS | Detecting Chaff Perturbation on Stepping-Stone Connection. | Shou-Hsuan Stephen Huang, Ying-Wei Kuo |
| 2010 | AINA | Using Dynamic Programming Techniques to Detect Multi-hop Stepping-Stone Pairs in a Connection Chain. | Ying-Wei Kuo, Shou-Hsuan Stephen Huang, Wei Ding, Rebecca Kern, Jianhua Yang |
| 2009 | AINA | Masquerade Detection Using Command Prediction and Association Rules Mining. | Han-Ching Wu, Shou-Hsuan Stephen Huang |
| 2009 | AINA | Correlating TCP/IP Interactive Sessions with Correlation Coefficient to Detect Stepping-Stone Intrusion. | Guoqing Zhao, Jianhua Yang, Gurdeep S. Hura, Long Ni, Shou-Hsuan Stephen Huang |
| 2009 | BIBE | A Multidimensional Flow Cytometry Data Classification. | Ming-Chih Shih, Shou-Hsuan Stephen Huang, Chung-Che Jeff Chang |
| 2008 | AINA | Detecting Masqueraders Using High Frequency Commands as Signatures. | Ming Dong Wan, Han-Ching Wu, Ying-Wei Kuo, James Marshall, Shou-Hsuan Stephen Huang |
| 2008 | ICPADS | An Algorithm to Detect Stepping-Stones in the Presence of Chaff Packets. | Ying-Wei Kuo, Shou-Hsuan Stephen Huang |
| 2008 | ISDA | User Behavior Analysis in Masquerade Detection Using Principal Component Analysis. | Han-Ching Wu, Shou-Hsuan Stephen Huang |
| 2007 | AINA | Detecting Stepping-Stone with Chaff Perturbations. | Han-Ching Wu, Shou-Hsuan Stephen Huang |
| 2007 | ATC | Stepping-Stone Detection Via Request-Response Traffic Analysis. | Shou-Hsuan Stephen Huang, Robert Lychev, Jianhua Yang |
| 2007 | ICPADS | Stepping-stone detection algorithm based on order preserving mapping. | Ying-Wei Kuo, Shou-Hsuan Stephen Huang |
| 2006 | AINA | Finding the Longest Similar Subsequence of Thumbprints for Intrusion Detection. | Ming Dong Wan, Shou-Hsuan Stephen Huang, Jianhua Yang |
| 2006 | AINA | A Clustering-Partitioning Algorithm to Find TCP Packet Round-Trip Time for Intrusion Detection. | Jianhua Yang, Shou-Hsuan Stephen Huang, Ming Dong Wan |
| 2005 | AINA | Matching TCP Packets and Its Application to the Detection of Long Connection Chains on the Internet. | Jianhua Yang, Shou-Hsuan Stephen Huang |
| 2003 | IKE | Similarity Among Web pages Based on their Link Structure. | Jess Ubaldo Quevedo-Torrero, Shou-Hsuan Stephen Huang |
| 2001 | WWW | WebLQM : A Web Community Examiner. | Jess Ubaldo Quevedo-Torrero, Shou-Hsuan Stephen Huang |
| 1999 | CBMS | An Efficient Sparse Matrix Based Parallel Image Reconstruction Algorithm for PET on SP2. | Wei-Min Jeng, Shou-Hsuan Stephen Huang |
| 1999 | PDPTA | An Efficient Parallel EM Algorithm: A Sparse Matrix Compaction Technique. | Wei-Min Jeng, Shou-Hsuan Stephen Huang |
| 1998 | CBMS | A Portable PET Image Reconstruction System for Parallel Machines. | Wei-Min Jeng, Shou-Hsuan Stephen Huang, David J. Yang |
| 1998 | ICPP | Inter-Iteration Optimization of Parallel EM Algorithm on Message-Passing Multicomputers. | Wei-Min Jeng, Shou-Hsuan Stephen Huang |
| 1996 | ICPP | Edge Embedding of Two-Dimensional Grids in Hypercubes with Dilation Two and Congestion Three. | Chien-Chi Lin, Xin Ma, Shou-Hsuan Stephen Huang |
| 1995 | ICPP | Embedding Two-Dimensional Grids into Hypercubes with Dilation 2 and Congestion 5. | Yuan Cai, Shou-Hsuan Stephen Huang, Chien-Chi Lin |
| 1993 | ICPP | On Embeddings of Rectangles into Optimal Squares. | Shou-Hsuan Stephen Huang, Hongfei Liu, Rakesh M. Verma |
| 1991 | DASFAA | DAVID Universal Books Management System. | Steve Szu-Yu Hu, Shou-Hsuan Stephen Huang, Barry E. Jacobs |
| 1990 | ICPP | A Sub-linear Parallel Algorithm for Some Dynamic Programming Problems. | Shou-Hsuan Stephen Huang, Hongfei Liu, Venkatraman Viswanathan |