| 2026 | ACL | AgentFactory: A Self-Evolving Framework Through Executable Subagent Accumulation and Reuse. | Zhang Zhang, Shuqi Lu, Hongjin Qian, Di He, Zheng Liu |
| 2025 | ICML | Beyond Atoms: Enhancing Molecular Pretrained Representations with 3D Space Modeling. | Shuqi Lu, Xiaohong Ji, Bohang Zhang, Lin Yao, Siyuan Liu, Zhifeng Gao, Linfeng Zhang, Guolin Ke |
| 2024 | ICML | Pre-Training Protein Bi-level Representation Through Span Mask Strategy On 3D Protein Chains. | Jiale Zhao, Wanru Zhuang, Jia Song, Yaqi Li, Shuqi Lu |
| 2023 | CIKM | MPerformer: An SE(3) Transformer-based Molecular Perceptron. | Fanmeng Wang, Hongteng Xu, Xi Chen, Shuqi Lu, Yuqing Deng, Wenbing Huang |
| 2021 | EMNLP | Less is More: Pretrain a Strong Siamese Encoder for Dense Text Retrieval Using a Weak Decoder. | Shuqi Lu, Di He, Chenyan Xiong, Guolin Ke, Waleed Malik, Zhicheng Dou, Paul Bennett, Tie-Yan Liu, Arnold Overwijk |
| 2020 | SIGIR | DVGAN: A Minimax Game for Search Result Diversification Combining Explicit and Implicit Features. | Jiongnan Liu, Zhicheng Dou, Xiaojie Wang, Shuqi Lu, Ji-Rong Wen |
| 2020 | SIGIR | Knowledge Enhanced Personalized Search. | Shuqi Lu, Zhicheng Dou, Chenyan Xiong, Xiaojie Wang, Ji-Rong Wen |
| 2019 | SIGIR | PSGAN: A Minimax Game for Personalized Search with Limited and Noisy Click Data. | Shuqi Lu, Zhicheng Dou, Jun Xu, Jian-Yun Nie, Ji-Rong Wen |