| 2005 | ECCB | Less is more: towards an optimal universal description of protein folds. | Joseph D. Szustakowski, Simon Kasif, Zhiping Weng |
| 2003 | ISMB | Predicting protein function from protein/protein interaction data: a probabilistic approach. | Stanley Letovsky, Simon Kasif |
| 2003 | PSB | Extracting Conserved Gene Expression Motifs from Gene Expression Data. | T. M. Murali, Simon Kasif |
| 2002 | FOCS | Learning a Hidden Matching. | Noga Alon, Richard Beigel, Simon Kasif, Steven Rudich, Benny Sudakov |
| 2001 | RECOMB | An optimal procedure for gap closing in whole genome shotgun sequencing. | Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow |
| 1996 | KDD | Local Induction of Decision Trees: Towards Interactive Data Mining. | Truxton Fulton, Simon Kasif, Steven Salzberg, David L. Waltz |
| 1995 | ICML | Efficient Algorithms for Finding Multi-way Splits for Decision Trees. | Truxton Fulton, Simon Kasif, Steven Salzberg |
| 1995 | UAI | Logarithmic-Time Updates and Queries in Probabilistic Networks. | Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl |
| 1994 | AAAI | Exploiting Algebraic Structure in Parallel State Space Search. | Jonathan Bright, Simon Kasif, Lewis Stiller |
| 1994 | ICML | Towards a Better Understanding of Memory-based Reasoning Systems. | John Rachlin, Simon Kasif, Steven Salzberg, David W. Aha |
| 1993 | AAAI | Probabilistic Prediction of Protein Secondary Structure Using Causal Networks (Extended Abstract). | Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu |
| 1993 | AAAI | OC1: A Randomized Induction of Oblique Decision Trees. | Sreerama K. Murthy, Simon Kasif, Steven Salzberg, Richard Beigel |
| 1993 | IJCAI | Induction of Oblique Decision Trees. | David G. Heath, Simon Kasif, Steven Salzberg |
| 1993 | ISMB | Protein Secondary-Structure Modeling with Probabilistic Networks. | Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu |
| 1992 | AAAI | Improved Decision-Making in Game Trees: Recovering from Pathology. | Arthur L. Delcher, Simon Kasif |
| 1991 | IJCAI | Learning Nested Concept Classes with Limited Storage. | David G. Heath, Simon Kasif, S. Rao Kosaraju, Steven Salzberg, Gregory F. Sullivan |
| 1991 | IJCAI | Learning with a Helpful Teacher. | Steven Salzberg, Arthur L. Delcher, David G. Heath, Simon Kasif |
| 1990 | ICLP | Efficient Parallel Term Matching and Anti-Unification. | Arthur L. Delcher, Simon Kasif |
| 1989 | KR | Parallel Solutions to Constraint Satisfaction Problems. | Simon Kasif |
| 1986 | AAAI | On the Parallel Complexity of Some Constraint Satisfaction Problems. | Simon Kasif |
| 1985 | IJCAI | The Intelligent Channel: A Scheme for Result Sharing in Logic Programs. | Simon Kasif, Jack Minker |
| 1983 | ICLP | PRISM - A Parallel Inference System for Problem Solving. | Simon Kasif, Madhur Kohli, Jack Minker |
| 1983 | IJCAI | PRISM: A Parallel Inference System for Problem Solving. | Simon Kasif, Madhur Kohli, Jack Minker |
| 1982 | ICLP | Logic Programming: A Parallel Approach. | Norbert Eisinger, Simon Kasif, Jack Minker |
| 1982 | ICPP | Logic Programming on ZMOB: A Highly Parallel Machine. | Upen S. Chakravarthy, Simon Kasif, Madhur Kohli, Jack Minker, D. Cao |