| 2026 | AAAI | OX-MABSR: A Benchmark for Open-domain Explainable Multimodal Aspect-Based Sentiment Reasoning. | Xinjing Liu, Zixin Xue, Pengyue Lin, Xinyu Tu, Siwei Xu, Ruifan Li |
| 2025 | ICDM | A Generative Method with Elements Enhancement for Comparative Opinion Quintuple Extraction. | Shuqin Ye, Xinjing Liu, Siwei Xu, Yongjun Huang, Xiaojie Wang, Ruifan Li |
| 2025 | ICIP | Multimodal Cell Context Instruction Tuning for Conditional DNA Regulatory Sequence Generation with Large Language Models. | Junhao Liu, Pengpeng Zhang, Siwei Xu, Shushrruth Sai Srinivasan, Yongxian Wu, Jing Zhang |
| 2024 | ACML | Understanding Transcriptional Regulatory Redundancy by Learnable Global Subset Perturbations. | Junhao Liu, Siwei Xu, Dylan Riffle, Ziheng Duan, Martin Renqiang Min, Jing Zhang |
| 2024 | BMVC | iHAST: Integrating Hybrid Attention for Super-Resolution in Spatial Transcriptomics. | Xi Li, Jing Zhang, Ziheng Duan, Yi Dai, Siwei Xu |
| 2024 | CIKM | iMIRACLE: An Iterative Multi-View Graph Neural Network to Model Intercellular Gene Regulation From Spatial Transcriptomic Data. | Ziheng Duan, Siwei Xu, Cheyu Lee, Dylan Riffle, Jing Zhang |
| 2024 | CIKM | scACT: Accurate Cross-modality Translation via Cycle-consistent Training from Unpaired Single-cell Data. | Siwei Xu, Junhao Liu, Jing Zhang |