| 2018 | AMIA | A Preliminary Study of Clinical Concept Detection Using Syntactic Relations. | Manabu Torii, Elly W. Yang, Son Doan |
| 2016 | AMIA | Ensembles of NLP Tools for Data Element Extraction from Clinical Notes. | Tsung-Ting Kuo, Pallavi Rao, Cleo K. Maehara, Son Doan, Juan D. Chaparro, Michele E. Day, Claudiu Farcas, Lucila Ohno-Machado, Chun-Nan Hsu |
| 2013 | AMIA | A Rule-based Natural Language Processing System in Tagging and Categorizing Phenotype Variables in NCBI's database of Genotypes and Phenotypes (dbGaP). | Son Doan, Ko-Wei Lin, Rebecca Walker, Seena Farzaneh, Neda Alipanah, Hyeoneui Kim |
| 2011 | IIWAS | Building a geographical ontology by using Wikipedia. | Hung Quoc Ngo, Son Doan, Werner Winiwarter |
| 2010 | COLING | An ontology-driven system for detecting global health events. | Nigel Collier, Reiko Matsuda Goodwin, John P. McCrae, Son Doan, Ai Kawazoe, Mike Conway, Asanee Kawtrakul, Koichi Takeuchi, Dinh Dien |
| 2010 | COLING | Recognizing Medication related Entities in Hospital Discharge Summaries using Support Vector Machine. | Son Doan, Hua Xu |
| 2008 | IJCNLP | Global Health Monitor - A Web-based System for Detecting and Mapping Infectious Diseases. | Son Doan, Hung Quoc Ngo, Ai Kawazoe, Nigel Collier |
| 2004 | HIS | An Efficient Feature Selection Using Multi-Criteria in Text Categorization. | Son Doan, Susumu Horiguchi |