| 2025 | CoopIS | Responsible AI Engineering Through the Systematic Management of Generative AI Risks. | Sonja Zillner, Ronald Schnitzer, Erik Scepanski |
| 2021 | NeSy | A New Concept for Explaining Graph Neural Networks. | Anna Himmelhuber, Sonja Zillner, Stephan Grimm, Martin Ringsquandl, Mitchell Joblin, Thomas A. Runkler |
| 2020 | ETFA | Ontology-Based Skill Description Learning for Flexible Production Systems. | Anna Himmelhuber, Stephan Grimm, Thomas A. Runkler, Sonja Zillner |
| 2018 | DATA | Architectural Considerations for a Data Access Marketplace. | Uwe Hohenstein, Sonja Zillner, Andreas Biesdorf |
| 2018 | DATA | Architectural Considerations for a Data Access Marketplace Based upon API Management. | Uwe Hohenstein, Sonja Zillner, Andreas Biesdorf |
| 2017 | CBMS | Automatic Extraction of Breast Cancer Information from Clinical Reports. | Claudia Bretschneider, Sonja Zillner, Matthias Hammon, Paul Gass, Daniel Sonntag |
| 2016 | ETFA | BPMN for knowledge acquisition and anomaly handling in CPS for smart factories. | Dmitri Valeri Panfilenko, Peter Poller, Daniel Sonntag, Sonja Zillner, Martin Schneider |
| 2014 | CBMS | The Medical Cyber-physical Systems Activity at EIT: A Look under the Hood. | Daniel Sonntag, Sonja Zillner, Samarjit Chakraborty, Andrs Lrincz, Esko Strmmer, Luciano Serafini |
| 2014 | INDIN | An ontology-based approach for decentralized monitoring and diagnostics. | Lisa Abele, Stephan Grimm, Sonja Zillner, Martin Kleinsteuber |
| 2014 | IRI | Towards a technology roadmap for big data applications in the healthcare domain. | Sonja Zillner, Heiner Oberkampf, Claudia Bretschneider, Amrapali Zaveri, Werner Faix, Sabrina Barbara Neururer |
| 2013 | HCI | Towards Medical Cyber-Physical Systems: Multimodal Augmented Reality for Doctors and Knowledge Discovery about Patients. | Daniel Sonntag, Sonja Zillner, Christian Schulz, Markus Weber, Takumi Toyama |
| 2013 | RANLP | Grammar-Based Lexicon Extension for Aligning German Radiology Text and Images. | Claudia Bretschneider, Sonja Zillner, Matthias Hammon |
| 2012 | IC3K | Knowledge Engineering Requirements for Generic Diagnostic Systems. | Andreas Mueller, Ingmar Hofmann, Heiner Oberkampf, Sonja Zillner |
| 2011 | CBMS | Aligning medical ontologies by axiomatic models, corpus linguistic syntactic rules and context information. | Sonja Zillner, Daniel Sonntag |
| 2011 | IRI | Using image metadata for automatic patient staging in Lymphoma. | Sonja Zillner |
| 2009 | RANLP | Deriving Clinical Query Patterns from Medical Corpora Using Domain Ontologies. | Pinar Oezden Wennerberg, Paul Buitelaar, Sonja Zillner |
| 2008 | CBMS | Medical Data Integration and the Semantic Annotation of Medical Protocols. | Rafael Berlanga Llavori, Ernesto Jimnez-Ruiz, Victoria Nebot, David Manset, Andrew Branson, Tamas Hauer, Richard McClatchey, Dmitri Rogulin, Jetendr Shamdasani, Sonja Zillner, Joerg Freund |
| 2008 | CBMS | Semantic Visualization of Patient Information. | Sonja Zillner, Tamas Hauer, Dmitri Rogulin, Alexey Tsymbal, Martin Huber, Tony Solomonides |
| 2008 | FOIS | KEMM: A Knowledge Engineering Methodology in the Medical Domain. | Pinar Wennerberg, Sonja Zillner, Manuel Mller, Paul Buitelaar, Michael Sintek |
| 2007 | CBMS | Feature Ontology for Improved Learning from Large-Dimensional Disease-Specific Heterogeneous Data. | Alexey Tsymbal, Sonja Zillner, Martin Huber |
| 2004 | CoopIS | EMMA - A Query Algebra for Enhanced Multimedia Meta Objects. | Sonja Zillner, Utz Westermann, Werner Winiwarter |
| 2004 | IIWAS | Ontology-Based Query Refinement for Multimedia Meta Objects. | Sonja Zillner, Werner Winiwarter |
| 2004 | WISE | Integrating Ontology Knowledge into a Query Algebra for Multimedia Meta Objects. | Sonja Zillner, Werner Winiwarter |