| 2018 | AMIA | Fourteen years of continuous computerized decision support service: A model for sustainable implementation. | Randall W. Grout, Tamara M. Dugan, Stephen M. Downs |
| 2017 | AMIA | A Six-Year Follow-Up of Clinical Decision Support System User Acceptability: Practice Makes Progress. | Randall W. Grout, Erika R. Cheng, Aaron E. Carroll, Stephen M. Downs, Nerissa S. Bauer |
| 2014 | AMIA | Electronic Implementation of Adolescent Health Guidelines for Preventative Care Transformation: Challenges for the Child Health Improvement through Computer Automation (CHICA) System. | David Chartash, Tamara M. Dugan, Amy Lewis-Gilbert, Matthew Aalsma, Stephen M. Downs |
| 2009 | AMIA | Implementing Broad Scale Childhood Immunization Decision Support as a Web Service. | Vivienne J. Zhu, Shaun J. Grannis, Marc B. Rosenman, Stephen M. Downs |
| 2009 | HCI | Tailoring Interface for Spanish Language: A Case Study with CHICA System. | Vibha Anand, Paul G. Biondich, Aaron E. Carroll, Stephen M. Downs |
| 2008 | AMIA | Probabilistic Asthma Case Finding: A Noisy OR Reformulation. | Vibha Anand, Stephen M. Downs |
| 2008 | AMIA | The CHICA Smoking Cessation System. | Stephen M. Downs, Vivienne J. Zhu, Vibha Anand, Paul G. Biondich, Aaron E. Carroll |
| 2006 | AMIA | Collaboration between the Medical Informatics Community and Guideline Authors: Fostering HIT Standard Development that Matters. | Paul G. Biondich, Stephen M. Downs, Aaron E. Carroll, Richard N. Shiffman, Clement J. McDonald |
| 2006 | AMIA | Using Arden Syntax and Adaptive Turnaround Documents to Evaluate Clinical Guidelines. | Stephen M. Downs, Paul G. Biondich, Vibha Anand, Meaghan Zore, Aaron E. Carroll |
| 2005 | AMIA | Automating the Recognition and Prioritization of Needed Preventive Services: Early Results from the CHICA System. | Paul G. Biondich, Stephen M. Downs, Vibha Anand, Aaron E. Carroll |
| 2005 | AMIA | Human and System Errors, Using Adaptive Turnaround Documents to Capture Data in a Busy Practice. | Stephen M. Downs, Aaron E. Carroll, Vibha Anand, Paul G. Biondich |
| 2003 | AMIA | Using Adaptive Turnaround Documents to Electronically Acquire Structured Data in Clinical Settings. | Paul G. Biondich, Vibha Anand, Stephen M. Downs, Clement J. McDonald |
| 2002 | AMIA | A modern optical character recognition system in a real world clinical setting: some accuracy and feasibility observations. | Paul G. Biondich, J. Marc Overhage, Paul Richard Dexter, Stephen M. Downs, Larry Lemmon, Clement J. McDonald |
| 2002 | AMIA | Expected value prioritization of prompts and reminders. | Stephen M. Downs, Hasmet Uner |
| 2002 | AMIA | A spatial analysis of obesogenic environments for children. | Gilbert C. Liu, Cynthia Cunningham, Stephen M. Downs, David G. Marrero, Naomi Fineberg |
| 2001 | AMIA | Multiple Uses of the Oblique Stroke (slash, "/") in Emergency Department Text: Developing Grammer Rules for Natural Language Processing. | Debbie A. Travers, Stephanie W. Haas, Stephen M. Downs |
| 2000 | AMIA | Mining association rules from a pediatric primary care decision support system. | Stephen M. Downs, Michael Y. Wallace |
| 2000 | AMIA | Comparing user acceptance of a computer system in two pediatric offices: a qualitative study. | Debbie A. Travers, Stephen M. Downs |
| 1999 | AMIA | Student and faculty performance in clinical simulations with access to a searchable information resource. | Vijoy Abraham, Charles P. Friedman, Barbara M. Wildemuth, Stephen M. Downs, P. J. Kantrowitz, E. N. Robinson |
| 1999 | AMIA | Scoring performance on computer-based patient simulations: beyond value of information. | Stephen M. Downs, Farah Marasigan, Vijoy Abraham, Barbara M. Wildemuth, Charles P. Friedman |
| 1998 | AMIA | WebINQUIRER: Transition of an Educational Database to a Platform-Independent Environment. | Robert T. Aarhus Jr., Stephen M. Downs, John W. Loonsk, Daniel S. Fritsch |
| 1997 | AMIA | A decision analytic method for scoring performance on computer-based patient simulations. | Stephen M. Downs, Charles P. Friedman, Farah Marasigan, Gary Gartner |