| 2013 | PSB | Systematic Identification of Risk Factors for Alzheimer's Disease Through Shared Genetic Architecture and Electronic Medical Records. | Li Li, David Ruau, Rong Chen, Susan C. Weber, Atul J. Butte |
| 2012 | AMIA | Oncoshare: Lessons learned from building an integrated multi-institutional database for comparative effectiveness research. | Susan C. Weber, Tina Seto, Cliff Olson, Pragati Kenkare, Allison W. Kurian, Amar K. Das |
| 2009 | AMIA | Automated Mapping of Pharmacy Orders from Two Electronic Health Record Systems to RxNorm within the STRIDE Clinical Data Warehouse. | Penni M. Hernandez, Tanya Podchiyska, Susan C. Weber, Todd A. Ferris, Henry J. Lowe |
| 2009 | AMIA | STRIDE - An Integrated Standards-Based Translational Research Informatics Platform. | Henry J. Lowe, Todd A. Ferris, Penni M. Hernandez, Susan C. Weber |
| 2008 | PSB | Novel Integration of Hospital Electronic Medical Records and Gene Expression Measurements to Identify Genetic Markers of Maturation. | David P. Chen, Susan C. Weber, Philip S. Constantinou, Todd A. Ferris, Henry J. Lowe, Atul J. Butte |
| 2007 | AMIA | Clinical Arrays of Laboratory Measures, or "Clinarrays", Built from an Electronic Health Record Enable Disease Subtyping by Severity. | David P. Chen, Susan C. Weber, Philip S. Constantinou, Todd A. Ferris, Henry J. Lowe, Atul J. Butte |