| 2012 | DATE | Experimentally driven verification of synthetic biological circuits. | Boyan Yordanov, Evan Appleton, Rishi Ganguly, Ebru Aydin Gol, Swati Banerjee Carr, Swapnil Bhatia, Traci Haddock, Calin Belta, Douglas Densmore |
| 2011 | RECOMB | Constrained De Novo Sequencing of Peptides with Application to Conotoxins. | Swapnil Bhatia, Yong J. Kil, Beatrix Ueberheide, Brian T. Chait, Lemmuel Lara Tayo, Lourdes J. Cruz, Bingwen Lu, John R. Yates III, Marshall W. Bern |
| 2010 | MASCOTS | Sequential Prefetch Cache Sizing for Maximal Hit Rate. | Swapnil Bhatia, Elizabeth Varki, Arif Merchant |
| 2009 | ICDCN | Self-similar Functions and Population Protocols: A Characterization and a Comparison. | Swapnil Bhatia, Radim Bartos |
| 2009 | ICDCN | A Mechanism to Structure Mission-Aware Interaction in Mobile Sensor Networks. | Michel Charpentier, Radim Bartos, Swapnil Bhatia |
| 2009 | WoWMoM | When opportunity proceeds from autonomy: A tour-based architecture for disconnected mobile sensors. | Michel Charpentier, Radim Bartos, Swapnil Bhatia |
| 2008 | FAST | TaP: Table-based Prefetching for Storage Caches. | Mingju Li, Elizabeth Varki, Swapnil Bhatia, Arif Merchant |
| 2005 | GLOBECOM | Closed-form expression for the collision probability in the IEEE EPON registration scheme. | Swapnil Bhatia, Radim Bartos |
| 2002 | CATA | Reader-Writer Locks for Network Attached Storage and Storage Area Networks. | Arun Gandhi, Elizabeth Varki, Swapnil Bhatia |