| 2026 | DCC | Dynamic r-Index: An Updatable Self-Index in LCP-Bounded Time. | Takaaki Nishimoto, Yasuo Tabei |
| 2026 | ESA | Dynamic Grammar-Compressed Self-Index in δ-Optimal Space. | Takaaki Nishimoto, Yasuo Tabei |
| 2022 | ESA | Computing NP-Hard Repetitiveness Measures via MAX-SAT. | Hideo Bannai, Keisuke Goto, Masakazu Ishihata, Shunsuke Kanda, Dominik Kppl, Takaaki Nishimoto |
| 2022 | ICALP | An Optimal-Time RLBWT Construction in BWT-Runs Bounded Space. | Takaaki Nishimoto, Shunsuke Kanda, Yasuo Tabei |
| 2021 | CPM | R-enum: Enumeration of Characteristic Substrings in BWT-runs Bounded Space. | Takaaki Nishimoto, Yasuo Tabei |
| 2021 | ICALP | Optimal-Time Queries on BWT-Runs Compressed Indexes. | Takaaki Nishimoto, Yasuo Tabei |
| 2021 | SPIRE | A Separation of γ and b via Thue-Morse Words. | Hideo Bannai, Mitsuru Funakoshi, Tomohiro I, Dominik Kppl, Takuya Mieno, Takaaki Nishimoto |
| 2019 | CPM | Conversion from RLBWT to LZ77. | Takaaki Nishimoto, Yasuo Tabei |
| 2019 | DCC | LZRR: LZ77 Parsing with Right Reference. | Takaaki Nishimoto, Yasuo Tabei |
| 2018 | DCC | A Dynamic Compressed Self-Index for Highly Repetitive Text Collections. | Takaaki Nishimoto, Yoshimasa Takabatake, Yasuo Tabei |
| 2017 | MFCS | Small-Space LCE Data Structure with Constant-Time Queries. | Yuka Tanimura, Takaaki Nishimoto, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda |
| 2016 | MFCS | Fully Dynamic Data Structure for LCE Queries in Compressed Space. | Takaaki Nishimoto, Tomohiro I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda |