| 2019 | IIWAS | A Privacy-Preserving Query System using Fully Homomorphic Encryption with Real-World Implementation for Medicine-Side Effect Search. | Yusheng Jiang, Tamotsu Noguchi, Nobuyuki Kanno, Yoshiko Yasumura, Takuya Suzuki, Yu Ishimaki, Hayato Yamana |
| 2008 | PDPTA | Large-Scale Computing for Protein-Protein Binding Free Energy Calculation. | Junichi Ikeda, Kazuki Ohno, Sayaka Akioka, Masaya Orita, Yoichi Muraoka, Tamotsu Noguchi, Masakazu Sekijima |
| 2007 | PDPTA | Development of Molecular Dynamics Simulation Based Flexible Docking System. | Sachi Kimura, Masakazu Sekijima, Masami Takata, Tamotsu Noguchi, Kazuki Joe |
| 2007 | PDPTA | Development of an SVM based Prediction System for Metalbinding Sites in Protein. | Masami Nakazawa, Masami Takata, Kiyonobu Yokota, Tamotsu Noguchi, Masakazu Sekijima, Kazuki Joe |
| 2005 | CIBCB | Feature Selection Based on Physicochemical Properties of Redefined N-term Region and C-term Regions for Predicting Disorder. | Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Tamotsu Noguchi |
| 1999 | PDPTA | ESCAPE: Parallel Tree Search System for Conformational Analysis of Peptides. | Makoto Ando, Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi |
| 1997 | ISMB | PDB-REPRDB: A Database of Representative Protein Chains in PDB (Protein Data Bank). | Tamotsu Noguchi, Kentaro Onizuka, Yutaka Akiyama, Minoru Saito |