| 2016 | AMIA | Profiling Fast Healthcare Interoperability Resources (FHIR) of Family Health History based on the Clinical Element Models. | Jaehoon Lee, Nathan C. Hulse, Grant M. Wood, Thomas A. Oniki, Stanley M. Huff |
| 2015 | AMIA | The Clinical Quality Framework Initiative to Harmonize Decision Support and Quality Measurement Standards: Defined Standards, Pilot Results, and Moving Beyond Quality Improvement. | Kensaku Kawamoto, Marc J. Hadley, Thomas A. Oniki, Julia L. Skapik |
| 2014 | AMIA | Computerization of Mental Health Integration Complexity Scores at Intermountain Healthcare. | Thomas A. Oniki, Drayton Rodrigues, Noman Rahman, Saritha Patur, Pascal Briot, David P. Taylor, Adam B. Wilcox, Brenda Reiss-Brennan, Wayne Cannon |
| 2012 | AMIA | Data Modeling for Incorporating Consumer-Entered Family Health History Data into the Electronic Health Record. | Jaehoon Lee, Pallavi Ranade-Kharkar, Nathan C. Hulse, Thomas A. Oniki, Grant M. Wood, Jacob S. Tripp, Ning Zhuo, Stanley M. Huff |
| 2012 | AMIA | Lessons Learned in Detailed Clinical Modeling at Intermountain Healthcare. | Thomas A. Oniki, Craig G. Parker, Joseph F. Coyle, Stanley M. Huff |
| 2012 | CIKM | Harmonization of detailed clinical models with clinical study data standard. | Guoqian Jiang, Julie Evans, Thomas A. Oniki, Joey Coyle, Landen Bain, Stanley M. Huff, Rebecca Daniels Kush, Christopher G. Chute |
| 1998 | AMIA | Implementation and Testing of a Respiratory Failure Care Process Model for Patients with Long-Term Mechanical Ventilation. | C. Jane Wallace, Thomas A. Oniki, Polly Bailey, Terry P. Clemmer |