| 2017 | AMIA | Evolution of Research Topics in MEDLINE. | Andrej Kastrin, Thomas C. Rindflesch, Dimitar Hristovski |
| 2016 | AMIA | Implementing Semantics-Based Cross-domain Collaboration Recommendation in Biomedicine with a Graph Database. | Dimitar Hristovski, Andrej Kastrin, Thomas C. Rindflesch |
| 2016 | AMIA | Differentiating Sense through Semantic Interaction Data. | Terri Elizabeth Workman, Charlene R. Weir, Thomas C. Rindflesch |
| 2014 | AMIA | Semantic Processing to Identify Adverse Drug Event Information from Black Box Warnings. | Adam Culbertson, Marcelo Fiszman, Dongwook Shin, Thomas C. Rindflesch |
| 2014 | AMIA | Identifying Plausible Adverse Drug Reactions Using Knowledge Extracted from the Literature. | Ning Shang, Hua Xu, Thomas C. Rindflesch, Trevor Cohen |
| 2014 | DIS | Link Prediction on the Semantic MEDLINE Network - An Approach to Literature-Based Discovery. | Andrej Kastrin, Thomas C. Rindflesch, Dimitar Hristovski |
| 2013 | AMIA | Semantic MEDLINE for Discovery Browsing: Using Semantic Predications and the Literature-Based Discovery Paradigm to Elucidate a Mechanism for the Obesity Paradox. | Michael J. Cairelli, Christopher M. Miller, Marcelo Fiszman, Terri Elizabeth Workman, Thomas C. Rindflesch |
| 2013 | AMIA | Semantic Processing to Identify Adverse Drug Event Information from Black Box Warnings. | Adam Culbertson, Marcelo Fiszman, Dongwook Shin, Thomas C. Rindflesch |
| 2013 | AMIA | Preliminary Evaluation of a Literature-based Discovery Method for Explaining Drug Adverse Effects. | Dimitar Hristovski, Anita Burgun-Parenthoine, Paul Avillach, Thomas C. Rindflesch |
| 2013 | AMIA | A Literature-Based Assessment of Concept Pairs as a Measure of Semantic Relatedness. | Terri Elizabeth Workman, Graciela Rosemblat, Marcelo Fiszman, Thomas C. Rindflesch |
| 2012 | AMIA | Using Literature-based Discovery to Explain Drug Adverse Effects. | Dimitar Hristovski, Anita Burgun, Paul Avillach, Thomas C. Rindflesch |
| 2012 | AMIA | Using SemRep to Label Semantic Relations Extracted from Clinical Text. | Ying Liu, Robert Bill, Marcelo Fiszman, Thomas C. Rindflesch, Ted Pedersen, Genevieve B. Melton, Serguei V. S. Pakhomov |
| 2012 | AMIA | Synonym, Topic Model and Predicate-Based Query Expansion for Retrieving Clinical Documents. | Qing T. Zeng, Doug Redd, Thomas C. Rindflesch, Jonathan R. Nebeker |
| 2009 | AMIA | Predication-based Semantic Indexing: Permutations as a Means to Encode Predications in Semantic Space. | Trevor Cohen, Roger W. Schvaneveldt, Thomas C. Rindflesch |
| 2009 | AMIA | Semantic Relations for Interpreting DNA Microarray Data. | Dimitar Hristovski, Andrej Kastrin, Borut Peterlin, Thomas C. Rindflesch |
| 2008 | AMIA | Semantic Processing to Support Clinical Guideline Development. | Marcelo Fiszman, Eduardo Ortiz, Bruce E. Bray, Thomas C. Rindflesch |
| 2008 | AMIA | Toward Automatic Recognition of High Quality Clinical Evidence. | Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch, Nancy L. Wilczynski, R. Brian Haynes |
| 2008 | ISMB | Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation. | Dimitar Hristovski, Andrej Kastrin, Borut Peterlin, Thomas C. Rindflesch |
| 2007 | AMIA | Using the Literature-Based Discovery Paradigm to Investigate Drug Mechanisms. | Caroline B. Ahlers, Dimitar Hristovski, Halil Kilicoglu, Thomas C. Rindflesch |
| 2007 | AMIA | Identifying Risk Factors for Metabolic Syndrome in Biomedical Text. | Marcelo Fiszman, Graciela Rosemblat, Caroline B. Ahlers, Thomas C. Rindflesch |
| 2007 | AMIA | Leveraging Semantic Knowledge in IRB Databases to Improve Translation Science. | John F. Hurdle, Jeffery R. Botkin, Thomas C. Rindflesch |
| 2007 | PSB | Extracting Semantic Predications from Medline Citations for Pharmacogenomics. | Caroline B. Ahlers, Marcelo Fiszman, Dina Demner-Fushman, Franois-Michel Lang, Thomas C. Rindflesch |
| 2007 | PSB | Multiple Approaches to Fine-Grained Indexing of the Biomedical Literature. | Aurlie Nvol, Sonya E. Shooshan, Susanne M. Humphrey, Thomas C. Rindflesch, Alan R. Aronson |
| 2006 | AMIA | Summarizing Drug Information in Medline Citations. | Marcelo Fiszman, Thomas C. Rindflesch, Halil Kilicoglu |
| 2006 | AMIA | Exploiting Semantic Relations for Literature-Based Discovery. | Dimitar Hristovski, Carol Friedman, Thomas C. Rindflesch, Borut Peterlin |
| 2006 | AMIA | Semantic Processing to Enhance Retrieval of Diagnosis Citations from Medline. | Charles Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Graciela Rosemblat, Franois-Michel Lang, Daphne Norwood, Thomas C. Rindflesch |
| 2005 | AMIA | Determining Prominent Subdomains in Medicine. | Powell J. Bernhardt, Susanne M. Humphrey, Thomas C. Rindflesch |
| 2005 | AMIA | Medical Facts to Support Inferencing in Natural Language Processing. | Thomas C. Rindflesch, Serguei Pakhomov, Marcelo Fiszman, Halil Kilicoglu, Vincent R. Snchez |
| 2005 | AMIA | Semantic characteristics of MEDLINE citations useful for therapeutic decision-making. | Charles Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Thomas C. Rindflesch |
| 2005 | ISMB | MedTag: A Collection of Biomedical Annotations. | Lawrence H. Smith, Lorraine K. Tanabe, Thomas C. Rindflesch, W. John Wilbur |
| 2003 | AMIA | Integrating a Hypernymic Proposition Interpreter into a Semantic Processor for Biomedical Texts. | Marcelo Fiszman, Thomas C. Rindflesch, Halil Kilicoglu |
| 2003 | AMIA | Interpreting Hypernymic Propositions in an Online Medical Encyclopedia. | Marcelo Fiszman, Thomas C. Rindflesch, Halil Kilicoglu |
| 2003 | AMIA | Towards (Semi-)automatic Generation of Bio-medical ontologies. | Vipul Kashyap, Cartic Ramakrishnan, Thomas C. Rindflesch |
| 2003 | AMIA | Semantic Relations Asserting the Etiology of Genetic Diseases. | Thomas C. Rindflesch, Bisharah Libbus, Dimitar Hristovski, Alan R. Aronson, Halil Kilicoglu |
| 2002 | ACL | Unsupervised, corpus-based method for extending a biomedical terminology. | Olivier Bodenreider, Thomas C. Rindflesch, Anita Burgun |
| 2002 | AMIA | NLP-based information extraction for managing the molecular biology literature. | Bisharah Libbus, Thomas C. Rindflesch |
| 2002 | AMIA | Discovering protein similarity using natural language processing. | Indra Neil Sarkar, Thomas C. Rindflesch |
| 2002 | AMIA | Exploring text mining from MEDLINE. | Padmini Srinivasan, Thomas C. Rindflesch |
| 2002 | AMIA | Finding UMLS Metathesaurus concepts in MEDLINE. | Suresh Srinivasan, Thomas C. Rindflesch, William T. Hole, Alan R. Aronson, James G. Mork |
| 2000 | AMIA | The NLM Indexing Initiative. | Alan R. Aronson, Olivier Bodenreider, Florence Chang, Susanne M. Humphrey, James G. Mork, Stuart J. Nelson, Thomas C. Rindflesch, W. John Wilbur |
| 2000 | AMIA | Argument identification for arterial branching predications asserted in cardiac catheterization reports. | Thomas C. Rindflesch, Carol A. Bean, Charles Sneiderman |
| 1999 | AMIA | From Bibliography to Test Collection: Enhancing Topical Relevance Assessment for Bibliographic Information Retrieval System Evaluation. | Carol A. Bean, C. R. Selden, Thomas C. Rindflesch, Alan R. Aronson |
| 1999 | AMIA | Mining molecular binding terminology from biomedical text. | Thomas C. Rindflesch, Lawrence Hunter, Alan R. Aronson |
| 1998 | AMIA | Automatic semantic interpretation of anatomic spatial relationships in clinical text. | Carol A. Bean, Thomas C. Rindflesch, Charles Sneiderman |
| 1998 | AMIA | Evaluating lexical variant generation to improve information retrieval. | Guy Divita, Allen C. Browne, Thomas C. Rindflesch |
| 1998 | AMIA | Identification of anatomical terminology in medical text. | Charles Sneiderman, Thomas C. Rindflesch, Carol A. Bean |
| 1997 | AMIA | Query expansion using the UMLS Metathesaurus. | Alan R. Aronson, Thomas C. Rindflesch |
| 1988 | COLING | Coordination in reconnaissance-attack parsing. | Michael B. Kac, Thomas C. Rindflesch |
| 1986 | COLING | Reconnaissance-Attack Parsing. | Michael B. Kac, Thomas C. Rindflesch, Karen L. Ryan |