| 2008 | APBC | Structural Descriptors of Protein-Protein Binding Sites. | Oliver Sander, Francisco S. Domingues, Hongbo Zhu, Thomas Lengauer, Ingolf Sommer |
| 2008 | ECCB | An integrative approach for predicting interactions of protein regions. | Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht |
| 2008 | ICML | Multi-task learning for HIV therapy screening. | Steffen Bickel, Jasmina Bogojeska, Thomas Lengauer, Tobias Scheffer |
| 2008 | ISMB | Selecting anti-HIV therapies based on a variety of genomic and clinical factors. | Michal Rosen-Zvi, Andr Altmann, Mattia Prosperi, Ehud Aharoni, Hani Neuvirth, Anders Snnerborg, Eugen Schlter, Daniel Struck, Yardena Peres, Francesca Incardona, Rolf Kaiser, Maurizio Zazzi, Thomas Lengauer |
| 2006 | ISMB | DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations. | Iris Antes, Shirley W. I. Siu, Thomas Lengauer |
| 2005 | ECCB | Decomposing protein networks into domain-domain interactions. | Mario Albrecht, Carola Huthmacher, Silvio C. E. Tosatto, Thomas Lengauer |
| 2004 | RECOMB | Learning multiple evolutionary pathways from cross-sectional data. | Niko Beerenwinkel, Jrg Rahnenfhrer, Martin Dumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer |
| 2003 | ECCB | Analyzing resistance phenomena in HIV with bioinformatics methods. | Thomas Lengauer |
| 2003 | ISMB | Methods for optimizing antiviral combination therapies. | Niko Beerenwinkel, Thomas Lengauer, Martin Dumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig |
| 2002 | ECCB | Editorial. | Thomas Lengauer |
| 2002 | ECCB | ECCB 2002 Organization. | Thomas Lengauer |
| 2002 | ISMB | Co-clustering of biological networks and gene expression data. | Daniel Hanisch, Alexander Zien, Ralf Zimmer, Thomas Lengauer |
| 2002 | RECOMB | Microarrays: how many do you need? | Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer |
| 2001 | ISMB | Centralization: a new method for the normalization of gene expression data. | Alexander Zien, Thomas Aigner, Ralf Zimmer, Thomas Lengauer |
| 2000 | ESA | Computational Biology - Algorithms and More. | Thomas Lengauer |
| 2000 | ISMB | Analysis of Gene Expression Data with Pathway Scores. | Alexander Zien, Robert Kffner, Ralf Zimmer, Thomas Lengauer |
| 2000 | RECOMB | A simple iterative approach to parameter optimization. | Alexander Zien, Ralf Zimmer, Thomas Lengauer |
| 1999 | PSB | Application of Parameter Optimization to Molecular Comparison Problems. | Christian Lemmen, Alexander Zien, Ralf Zimmer, Thomas Lengauer |
| 1999 | WG | Invited Lecture: Discrete Optimization Methods for Packing Problems in Two and Three Dimensions - With Applications in the Textile and Car Manufacturing Industries. | Thomas Lengauer |
| 1998 | STOC | Random Generation of Embedded Graphs and an Extension to Dobrushin Uniqueness (Extended Abstract). | Marcus Peinado, Thomas Lengauer |
| 1997 | GI | Algorithmen zum automatischen Zeichnen von Graphen im Rahmen des DFG-Schwerpunkts Effiziente Algorithmen fr diskrete Probleme und ihre Anwendungen. | Franz-Josef Brandenburg, Michael Jnger, Petra Mutzel, Thomas Lengauer |
| 1997 | GI | DFG-Schwerpunkt: Informatikmethoden zur Analyse und Interpretation groer genomischer Datenmengen. | Thomas Lengauer |
| 1997 | ISMB | Detection of Distant Structural Similarities in a Set of Proteins Using a Fast Graph-Based Method. | Ina Koch, Thomas Lengauer |
| 1997 | RECOMB | Fast and numerically stable parametric alignment of biosequences. | Ralf Zimmer, Thomas Lengauer |
| 1996 | ESA | Computing Upper and Lower Bounds on Textile Nesting Problems. | Ralf Heckmann, Thomas Lengauer |
| 1995 | DATE | EMC-driven midway routing on PCBs. | H. Schmidt, Dirk Theune, Ralf Thiele, Thomas Lengauer |
| 1995 | ICCAD | APPlaUSE: Area and performance optimization in a unified placement and synthesis environment. | Elof Frank, Thomas Lengauer |
| 1995 | ISMB | Time-Efficient Docking of Flexible Ligands into Active Sites of Proteins. | Matthias Rarey, Bernd Kramer, Thomas Lengauer |
| 1995 | ISMB | Recursive Dynamic Programming for Adaptive Sequence and Structure Alignment. | Ralf Thiele, Ralf Zimmer, Thomas Lengauer |
| 1993 | SODA | Efficient Automatic Part Nesting on Irregular and Inhomogeneous Surfaces. | Jrg Heistermann, Thomas Lengauer |
| 1992 | ICCAD | HERO: hierarchical EMC-constrained routing. | Dirk Theune, Ralf Thiele, Thomas Lengauer, Anja Feldmann |
| 1991 | ICALP | Efficient Algorithms for Path Problems with Gernal Cost Citeria. | Thomas Lengauer, Dirk Theune |
| 1991 | WADS | Unstructured Path Problems and the Making of Semirings (Preliminary Version). | Thomas Lengauer, Dirk Theune |
| 1990 | ICCAD | A Robust Framework for Hierarchical Floorplanning with Integrated Global Wiring. | Thomas Lengauer, Rolf Mller |
| 1988 | ICALP | Efficient Analysis of Graph Properties on Context-free Graph Languages (Extended Abstract). | Thomas Lengauer, Egon Wanke |
| 1987 | STACS | The Correlation Between the Complexities of the Nonhierarchical and Hierarchical Versions of Graph Problems. | Thomas Lengauer, Klaus W. Wagner |
| 1986 | GI | Hierarchische Darstellung geometrischer Objekte und ihre algorithmische Bedeutung. | Thomas Lengauer |
| 1986 | ICALP | Hierarchical Planary Testing Algorithms. | Thomas Lengauer |
| 1986 | STACS | Efficient Algorithms for Finding Minimum Spanning Forests of Hierarchically Defined Graphs. | Thomas Lengauer |
| 1984 | GI | Algorithmische Spezifikation von symbolischen Layouts integrierter Schaltkreise. | Thomas Lengauer |
| 1983 | WG | Efficient Algorithms for the Constraint Generation for Integrated Circuit Layout Compaction. | Thomas Lengauer |
| 1982 | FOCS | The Complexity of Compacting Hierarchically Specified Layouts of Integrated Circuits (Preliminary Version) | Thomas Lengauer |
| 1982 | WG | On the Solution of Inequality Systems Relevant to IC-Layout. | Thomas Lengauer |
| 1979 | STOC | The Pebbling Problem is Complete in Polynomial Space | John R. Gilbert, Thomas Lengauer, Robert Endre Tarjan |
| 1979 | STOC | Upper and Lower Bounds on Time-Space Tradeoffs | Thomas Lengauer, Robert Endre Tarjan |