| 2024 | ICST | Timed Model-Based Mutation Operators for Simulink Models. | Jian Chen, Manar H. Alalfi, Thomas R. Dean |
| 2019 | SCAM | Software Engineering by Source Transformation - Experience with TXL (Most Influential Paper, SCAM 2001). | James R. Cordy, Thomas R. Dean, Andrew J. Malton, Kevin A. Schneider |
| 2018 | ACSSC | Fast Blind MIMO Decoding through Vertex Hopping. | Jonathan Perlstein, Thomas R. Dean, Mary Wootters, Andrea Goldsmith |
| 2018 | WISTP | Generating a Real-Time Constraint Engine for Network Protocols. | Mohamed Sami Rakha, Fahim T. Imam, Thomas R. Dean |
| 2017 | GLOBECOM | Blind Joint MIMO Channel Estimation and Decoding. | Thomas R. Dean, Mary Wootters, Andrea Goldsmith |
| 2017 | PIMRC | A new modulation technique for Doppler compensation in frequency-dispersive channels. | Thomas R. Dean, Mainak Chowdhury, Andrea Goldsmith |
| 2017 | PST | Context Sensitive and Secure Parser Generation for Deep Packet Inspection of Binary Protocols. | Ali ElShakankiry, Thomas R. Dean |
| 2016 | FOIS | Affordances in Representing the Behaviour of Event-Based Systems. | Fahim T. Imam, Thomas R. Dean |
| 2016 | KES | Modelling Functional Behavior of Event-based Systems: A Practical Knowledge-based Approach. | Fahim T. Imam, Thomas R. Dean |
| 2016 | PST | Intrusion detection in a private network by satisfying constraints. | Md Siam Hasan, Ali ElShakankiry, Thomas R. Dean, Mohammad Zulkernine |
| 2013 | ICWE | A Framework for Migrating Web Applications to Web Services. | Asil A. Almonaies, Manar H. Alalfi, James R. Cordy, Thomas R. Dean |
| 2013 | ITW | Physical-layer cryptography through massive MIMO. | Thomas R. Dean, Andrea Goldsmith |
| 2012 | ICWE | Recovering Role-Based Access Control Security Models from Dynamic Web Applications. | Manar H. Alalfi, James R. Cordy, Thomas R. Dean |
| 2009 | ICST | Automated Reverse Engineering of UML Sequence Diagrams for Dynamic Web Applications. | Manar H. Alalfi, James R. Cordy, Thomas R. Dean |
| 2008 | SCAM | Automated Migration of List Based JSP Web Pages to AJAX. | Jason Chu, Thomas R. Dean |
| 2007 | ICWE | A Survey of Analysis Models and Methods in Website Verification and Testing. | Manar H. Alalfi, James R. Cordy, Thomas R. Dean |
| 2005 | SCAM | Transforming Embedded Java Code into Custom Tags. | Shannon Xu, Thomas R. Dean |
| 2003 | SCAM | Unique Renaming of Java Using Source Transformation. | Xinping Guo, James R. Cordy, Thomas R. Dean |
| 2002 | SCAM | Grammar Programming in TXL. | Thomas R. Dean, James R. Cordy, Andrew J. Malton, Kevin A. Schneider |
| 2001 | SCAM | Software Engineering by Source Transformation-Experience with TXL. | James R. Cordy, Thomas R. Dean, Andrew J. Malton, Kevin A. Schneider |
| 1993 | ICSE | Software Structure Characterization Using Connectivity. | Thomas R. Dean, James R. Cordy |