| 2025 | MICCAI | AnatomyGen: Generating Anatomically Plausible Human Phantoms at High Resolution. | Gasper Podobnik, Nidhi Balodi, Benjamin D. Killeen, Tomaz Vrtovec, Mathias Unberath |
| 2025 | MICCAI | Transformer-Based Instance Detection in 3D Medical Images. | Luka Skrlj, Samuel Kadoury, Tomaz Vrtovec |
| 2024 | MICCAI | Implicitly Explicit: Segmenting Vertebrae with Deep Implicit Statistical Shape Models. | Gasper Podobnik, Domen Ocepek, Luka Skrlj, Tomaz Vrtovec |
| 2024 | MICCAI | HDilemma: Are Open-Source Hausdorff Distance Implementations Equivalent? | Gasper Podobnik, Tomaz Vrtovec |
| 2023 | MICCAI | Multimodal CT and MR Segmentation of Head and Neck Organs-at-Risk. | Gasper Podobnik, Primoz Strojan, Primoz Peterlin, Bulat Ibragimov, Tomaz Vrtovec |
| 2018 | MICCAI | Automated Measurement of Pelvic Incidence from X-Ray Images. | Robert Korez, Michael Putzier, Tomaz Vrtovec |
| 2017 | MICCAI | Segmentation of Pathological Spines in CT Images Using a Two-Way CNN and a Collision-Based Model. | Robert Korez, Bostjan Likar, Franjo Pernus, Tomaz Vrtovec |
| 2017 | MICCAI | 3D Cobb Angle Measurements from Scoliotic Mesh Models with Varying Face-Vertex Density. | Uros Petkovic, Robert Korez, Stefan Parent, Samuel Kadoury, Tomaz Vrtovec |
| 2016 | MICCAI | Manual and Computer-Assisted Pedicle Screw Placement Plans: A Quantitative Comparison. | Dejan Knez, Janez Mohar, Robert J. Cirman, Bostjan Likar, Franjo Pernus, Tomaz Vrtovec |
| 2016 | MICCAI | Model-Based Segmentation of Vertebral Bodies from MR Images with 3D CNNs. | Robert Korez, Bostjan Likar, Franjo Pernus, Tomaz Vrtovec |
| 2015 | MICCAI | Automated Pedicle Screw Size and Trajectory Planning by Maximization of Fastening Strength. | Dejan Knez, Bostjan Likar, Franjo Pernus, Tomaz Vrtovec |
| 2015 | MICCAI | Deformable Model-Based Segmentation of Intervertebral Discs from MR Spine Images by Using the SSC Descriptor. | Robert Korez, Bulat Ibragimov, Bostjan Likar, Franjo Pernus, Tomaz Vrtovec |
| 2010 | ICPR | Automated Tracking of Vesicles in Phase Contrast Microscopy Images. | Peter Usenik, Tomaz Vrtovec, Franjo Pernus, Bostjan Likar |
| 2008 | MICCAI | A Symmetry-Based Method for the Determination of Vertebral Rotation in 3D. | Tomaz Vrtovec, Franjo Pernus, Bostjan Likar |
| 2006 | MICCAI | Generation of Curved Planar Reformations from Magnetic Resonance Images of the Spine. | Tomaz Vrtovec, Sbastien Ourselin, Lavier Gomes, Bostjan Likar, Franjo Pernus |