| 2019 | AAAI | MFBO-SSM: Multi-Fidelity Bayesian Optimization for Fast Inference in State-Space Models. | Mahdi Imani, Seyede Fatemeh Ghoreishi, Douglas L. Allaire, Ulisses M. Braga-Neto |
| 2017 | ACSSC | Bayesian top scoring pairs for feature selection. | Emre Arslan, Ulisses M. Braga-Neto |
| 2017 | ACSSC | Optimal finite-horizon sensor selection for Boolean Kalman Filter. | Mahdi Imani, Ulisses M. Braga-Neto |
| 2017 | ACSSC | Nonstationary linear discriminant analysis. | Shuilian Xie, Mahdi Imani, Edward R. Dougherty, Ulisses M. Braga-Neto |
| 2017 | ICASSP | A Bayesian approach to Top-Scoring Pairs classification. | Emre Arslan, Ulisses M. Braga-Neto |
| 2017 | ICASSP | Classification of Gaussian trajectories with missing data in Boolean gene regulatory networks. | Alireza Karbalayghareh, Ulisses M. Braga-Neto, Edward R. Dougherty |
| 2017 | ICASSP | Boolean Kalman Filter with correlated observation noise. | Levi D. McClenny, Mahdi Imani, Ulisses M. Braga-Neto |
| 2015 | ACSSC | Optimal gene regulatory network inference using the Boolean Kalman filter and multiple model adaptive estimation. | Mahdi Imani, Ulisses M. Braga-Neto |
| 2011 | ACSSC | Optimal state estimation for Boolean dynamical systems. | Ulisses M. Braga-Neto |
| 2011 | ACSSC | Session TA1b: Biosignal estimation and classification. | Ulisses M. Braga-Neto, Antonia Papandreou-Suppappola |
| 2011 | ACSSC | Maximum likelihood estimation of the binary Coefficient of Determination. | Ting Chen, Ulisses M. Braga-Neto |
| 2005 | ISMM | Grayscale Level Multiconnectivity. | Ulisses M. Braga-Neto |
| 2000 | ISMM | Multiresolution Connectivity: An Axiomatic Approach. | Ulisses M. Braga-Neto, John Goutsias |