| 2024 | RECOMB | Mapping the Topography of Spatial Gene Expression with Interpretable Deep Learning. | Uthsav Chitra, Brian J. Arnold, Hirak Sarkar, Cong Ma, Sereno Lopez-Darwin, Kohei Sanno, Benjamin J. Raphael |
| 2022 | RECOMB | NetMix2: Unifying Network Propagation and Altered Subnetworks. | Uthsav Chitra, Tae Yoon Park, Benjamin J. Raphael |
| 2022 | RECOMB | Belayer: Modeling Discrete and Continuous Spatial Variation in Gene Expression from Spatially Resolved Transcriptomics. | Cong Ma, Uthsav Chitra, Shirley Zhang, Benjamin J. Raphael |
| 2021 | ICML | Quantifying and Reducing Bias in Maximum Likelihood Estimation of Structured Anomalies. | Uthsav Chitra, Kimberly Ding, Jasper C. H. Lee, Benjamin J. Raphael |
| 2020 | RECOMB | NetMix: A Network-Structured Mixture Model for Reduced-Bias Estimation of Altered Subnetworks. | Matthew A. Reyna, Uthsav Chitra, Rebecca Elyanow, Benjamin J. Raphael |
| 2020 | WSDM | Analyzing the Impact of Filter Bubbles on Social Network Polarization. | Uthsav Chitra, Christopher Musco |
| 2019 | ICML | Random Walks on Hypergraphs with Edge-Dependent Vertex Weights. | Uthsav Chitra, Benjamin J. Raphael |