| 2014 | SSDBM | Maintaining a microbial genome & metagenome data analysis system in an academic setting. | I-Min A. Chen, Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Ken Chu |
| 2013 | SSDBM | Accelerating gene context analysis using bitmaps. | Alexandru Romosan, Arie Shoshani, Kesheng Wu, Victor M. Markowitz, Konstantinos Mavrommatis |
| 2009 | RECOMB | A Statistical Framework for the Functional Analysis of Metagenomes. | Itai Sharon, Amrita Pati, Victor M. Markowitz, Ron Y. Pinter |
| 2008 | ECCB | Annotation of metagenome short reads using proxygenes. | Daniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz |
| 2006 | ISMB | An experimental metagenome data management and analysis system. | Victor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Hctor Garca Martn, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides |
| 2005 | VLDB | The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management. | Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Natalia Ivanova, Nikos Kyrpides |
| 2004 | VLDB | Biological Data Management: Research, Practice and Opportunities. | Thodoros Topaloglou, Susan B. Davidson, H. V. Jagadish, Victor M. Markowitz, Evan W. Steeg, Mike Tyers |
| 2002 | EDBT | Gene Expression Data Management: A Case Study. | Victor M. Markowitz, I-Min A. Chen, Anthony Kosky |
| 2001 | BIBE | Applying Data Warehousing Concepts to Gene Expression Data Management. | Victor M. Markowitz, Thodoros Topaloglou |
| 1999 | ISMB | Seamless Integration of Biological Applications within a Database Framework. | Thodoros Topaloglou, Anthony Kosky, Victor M. Markowitz |
| 1998 | EDBT | Exploring Heterogeneous Biological Databases: Tools and Applications. | Anthony Kosky, I-Min A. Chen, Victor M. Markowitz, Ernest Szeto |
| 1998 | ISMB | Advanced Query Mechanisms for Biological Databases. | I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto, Thodoros Topaloglou |
| 1997 | ICDE | Developing and Accessing Scientific Databases with the OPM Data Management Tools. | I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto |
| 1997 | SSDBM | Developing and Accessing Scientific Databases with the Object-Protocol (OPM) Data Management Tools | I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto |
| 1997 | SSDBM | Constructing and Maintaining Scientific Database Views in the Framework of the Object-Protocol Model. | I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto |
| 1996 | EDBT | Version Management for Scientific Databases. | I-Min A. Chen, Victor M. Markowitz, Stanley Letovsky, Peter Li, Kenneth H. Fasman |
| 1995 | ICDE | Modeling Scientific Experiments with an Object Data Model. | I-Min A. Chen, Victor M. Markowitz |
| 1994 | ER | An Overview of the Lawrence Berkeley Laboratory Extended Entity-Relationship Database Tools. | Victor M. Markowitz, Arie Shoshani |
| 1993 | DEXA | Data Management Tools for Genomic Applications: A Progress Report. | Victor M. Markowitz, I-Min A. Chen |
| 1993 | ICDE | Object Queries over Relational Databases: Language, Implementation, and Applications. | Victor M. Markowitz, Arie Shoshani |
| 1992 | ICDE | A Relation Merging Technique for Relational Databases. | Victor M. Markowitz |
| 1992 | SSDBM | Data Management for Genomic Mapping Applications: A Case Study. | Victor M. Markowitz, Suzanna Lewis, John L. McCarthy, Frank Olken, Manfred Zorn |
| 1991 | ICDE | Problems Underlying the Use of Referential Integrity in Relational Database Management Systems. | Victor M. Markowitz |
| 1991 | VLDB | Safe Referential Integrity Structures in Relational Databases. | Victor M. Markowitz |
| 1990 | ICDE | Representing Processes in the Extended Entity-Relationship Model. | Victor M. Markowitz |
| 1990 | VLDB | Referential Integrity Revisited: An Object-Oriented Perspective. | Victor M. Markowitz |
| 1989 | ER | Name Assignment Techniques for Relational Schemas Representing Extended Entity-Relationship Schemas. | Victor M. Markowitz, Arie Shoshani |
| 1989 | ER | Abbreviated Query Interpretation in Extended Entity-Relationship Oriented Databases. | Victor M. Markowitz, Arie Shoshani |
| 1989 | SIGMOD | On the Correctness of Representing Extended Entity-Relationship Structures in the Relational Model. | Victor M. Markowitz, Arie Shoshani |
| 1988 | ICDE | Incremental Restructuring of Relational Schemas. | Victor M. Markowitz, Johann A. Makowsky |
| 1987 | VLDB | Incremental Reorganization of Relational Databases. | Victor M. Markowitz, Johann A. Makowsky |
| 1986 | ICDT | Entity-Relationship Consistency for Relational Schemas. | Johann A. Makowsky, Victor M. Markowitz, Nimrod Rotics |
| 1983 | ER | A Modified Relational Algebra and its Use in an Entity-Relationship Environment. | Victor M. Markowitz, Yoav Raz |
| 1983 | ER | ERROL: An Entity-Relationship, Role Oriented, Query Language. | Victor M. Markowitz, Yoav Raz |