| 2025 | EMNLP | pEBR: A Probabilistic Approach to Embedding Based Retrieval. | Han Zhang, Yunjiang Jiang, Mingming Li, Haowei Yuan, Yiming Qiu, Wen-Yun Yang |
| 2023 | CIKM | Differentiable Retrieval Augmentation via Generative Language Modeling for E-commerce Query Intent Classification. | Chenyu Zhao, Yunjiang Jiang, Yiming Qiu, Han Zhang, Wen-Yun Yang |
| 2022 | CIKM | Pre-training Tasks for User Intent Detection and Embedding Retrieval in E-commerce Search. | Yiming Qiu, Chenyu Zhao, Han Zhang, Jingwei Zhuo, Tianhao Li, Xiaowei Zhang, Songlin Wang, Sulong Xu, Bo Long, Wen-Yun Yang |
| 2022 | ICLR | Givens Coordinate Descent Methods for Rotation Matrix Learning in Trainable Embedding Indexes. | Yunjiang Jiang, Han Zhang, Yiming Qiu, Yun Xiao, Bo Long, Wen-Yun Yang |
| 2021 | ICDE | Query Rewriting via Cycle-Consistent Translation for E-Commerce Search. | Yiming Qiu, Kang Zhang, Han Zhang, Songlin Wang, Sulong Xu, Yun Xiao, Bo Long, Wen-Yun Yang |
| 2021 | SIGIR | SearchGCN: Powering Embedding Retrieval by Graph Convolution Networks for E-Commerce Search. | Xinlin Xia, Shang Wang, Han Zhang, Songlin Wang, Sulong Xu, Yun Xiao, Bo Long, Wen-Yun Yang |
| 2021 | SIGIR | Joint Learning of Deep Retrieval Model and Product Quantization based Embedding Index. | Han Zhang, Hongwei Shen, Yiming Qiu, Yunjiang Jiang, Songlin Wang, Sulong Xu, Yun Xiao, Bo Long, Wen-Yun Yang |
| 2014 | RECOMB | A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation. | Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc |
| 2012 | ACSSC | Efficient genotyping of individuals using overlapping pool sequencing and imputation. | Farhad Hormozdiari, Zhanyong Wang, Wen-Yun Yang, Eleazar Eskin |
| 2012 | RECOMB | CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping. | Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin |
| 2010 | SDM | Spectral and Semidefinite Relaxation of the CLUHSIC Algorithm. | Wen-Yun Yang, James T. Kwok, Bao-Liang Lu |
| 2009 | EMNLP | A Structural Support Vector Method for Extracting Contexts and Answers of Questions from Online Forums. | Wen-Yun Yang, Yunbo Cao, Chin-Yew Lin |
| 2008 | APBC | String Kernels with Feature Selection for SVM Protein Classification. | Wen-Yun Yang, Bao-Liang Lu |
| 2008 | APBC | Classification of Protein Sequences Based on Word Segmentation Methods. | Yang Yang, Bao-Liang Lu, Wen-Yun Yang |
| 2006 | CIBCB | A Comparative Study on Feature Extraction from Protein Sequences for Subcellular Localization Prediction. | Wen-Yun Yang, Bao-Liang Lu, Yang Yang |