| 2021 | CIBCB | Ring Optimization of Epidemic Contact Networks. | Daniel A. Ashlock, Joseph Alexander Brown, Wendy Ashlock, Michael Dub |
| 2020 | CIBCB | Visualizing Contact Networks Evolved To Fit Epidemic Profiles. | Wendy Ashlock |
| 2019 | CIBCB | Implementing Phenotypic Plasticity with an Adaptive Generative Representation. | Daniel A. Ashlock, Wendy Ashlock, James Montgomery |
| 2017 | CIBCB | A note on population size inspired by the extinction of mammoths. | Daniel A. Ashlock, Wendy Ashlock |
| 2017 | CIBCB | Infinite string block matching features for DNA classification. | Daniel A. Ashlock, Sierra Gillis, Wendy Ashlock |
| 2016 | CEC | An exploration of the space Of DNA structural properties using an evolutionary algorithm. | Wendy Ashlock |
| 2015 | CEC | Evolving Side Effect Machines to measure distances between DNA promoter sequences. | Wendy Ashlock |
| 2015 | CIBCB | Chaos automata for sequence visualization. | Daniel A. Ashlock, Cameron McGuinness, Wendy Ashlock |
| 2014 | CIBCB | Side effect machine features for analysis and comparison of DNA promoter sequences. | Wendy Ashlock |
| 2012 | CEC | Impact of regulatory genes on optimization behavior. | Daniel A. Ashlock, Wendy Ashlock |
| 2011 | CIBCB | Designing artificial organisms for use in biological simulations. | Wendy Ashlock, Daniel A. Ashlock |
| 2010 | CEC | Virtual retroviruses in grid walkers: Effects on genome organization. | Wendy Ashlock, Daniel A. Ashlock |
| 2010 | CIBCB | Detecting retroviruses using reading frame information and side effect machines. | Wendy Ashlock, Suprakash Datta |
| 2009 | CIBCB | Simulation of the impact of retroviruses on genome organization of an artificial organism. | Daniel A. Ashlock, Wendy Ashlock |
| 2008 | CEC | Evolving diverse populations of Prisoner's Dilemma strategies. | Wendy Ashlock |
| 2008 | CIBCB | Transience in the simulation of ring species. | Dan Ashlock, Taika von Konigslow, Elizabeth Clare, Wendy Ashlock |
| 2007 | CEC | Fingerprint analysis of the noisy prisoner's dilemma. | Daniel A. Ashlock, Eun-Youn Kim, Wendy Ashlock |
| 2006 | CEC | Using Very Small Population Sizes in Genetic Programming. | Wendy Ashlock |
| 2006 | CEC | Changes in Prisoner's Dilemma Strategies Over Evolutionary Time With Different Population Sizes. | Wendy Ashlock, Daniel A. Ashlock |
| 2006 | CIBCB | An Exploration of Differential Utility in Iterated Prisoner's Dilemma. | Dan Ashlock, Wendy Ashlock, Gary Umphry |
| 2005 | CEC | Single parent genetic programming. | Wendy Ashlock, Dan Ashlock |
| 2005 | CEC | Rapid training of thermal agents with single parent genetic programming. | Daniel A. Ashlock, Kenneth Mark Bryden, Wendy Ashlock, Stephen P. Gent |