| 2026 | AAAI | MSAnchor: De Novo Molecular Generation from Mass Spectrometry Data with Anchor-Extended Molecular Scaffolds. | Xiaohan Qin, Chao Wang, Zhengyang Zhou, Linjiang Chen, Wenjie Du, Yang Wang |
| 2026 | ACL | Interleaved Tool-Call Reasoning for Protein Function Understanding. | Chuanliu Fan, Zicheng Ma, Huanran Meng, Aijia Zhang, Wenjie Du, Jun Zhang, Ziqiang Cao, Guohong Fu |
| 2026 | ACL | Med-SRAF: A Multi-Agent Framework for Medical Reasoning via Semantic Routing and Agentic Fusion. | Xiao Li, Zhuo Chen, Jun Xia, Hongxin Xiang, Chao Wang, Wenjie Du, Yang Wang |
| 2025 | ACL | Time-MQA: Time Series Multi-Task Question Answering with Context Enhancement. | Yaxuan Kong, Yiyuan Yang, Yoontae Hwang, Wenjie Du, Stefan Zohren, Zhangyang Wang, Ming Jin, Qingsong Wen |
| 2025 | ICLR | ReNovo: Retrieval-Based \emph{De Novo} Mass Spectrometry Peptide Sequencing. | Shaorong Chen, Jun Xia, Jingbo Zhou, Lecheng Zhang, Zhangyang Gao, Bozhen Hu, Cheng Tan, Wenjie Du, Stan Z. Li |
| 2025 | ICLR | Iterative Substructure Extraction for Molecular Relational Learning with Interactive Graph Information Bottleneck. | Shuai Zhang, Junfeng Fang, Xuqiang Li, Hongxin Xiang, Alan Xia, Ye Wei, Wenjie Du, Yang Wang |
| 2025 | ICML | Enhancing Graph Invariant Learning from a Negative Inference Perspective. | Kuo Yang, Zhengyang Zhou, Qihe Huang, Wenjie Du, Limin Li, Wu Jiang, Yang Wang |
| 2025 | IJCAI | DO-CoLM: Dynamic 3D Conformation Relationships Capture with Self-Adaptive Ordering Molecular Relational Modeling in Language Models. | Zhuo Chen, Jiahui Zhang, Sihan Wang, Hongxin Xiang, Jianmin Wang, Wenjie Du, Yang Wang |
| 2025 | IJCAI | MTGIB-UNet: A Multi-Task Graph Information Bottleneck and Uncertainty Weighted Network for ADMET Prediction. | Xuqiang Li, Wenjie Du, Jun Xia, Jianmin Wang, Xiaoqi Wang, Yang Yang, Yang Wang |
| 2025 | IJCAI | Deep Learning for Multivariate Time Series Imputation: A Survey. | Jun Wang, Wenjie Du, Yiyuan Yang, Linglong Qian, Wei Cao, Keli Zhang, Wenjia Wang, Yuxuan Liang, Qingsong Wen |
| 2025 | IJCAI | Electron Density-enhanced Molecular Geometry Learning. | Hongxin Xiang, Jun Xia, Xin Jin, Wenjie Du, Li Zeng, Xiangxiang Zeng |
| 2025 | MOBICOM | LLM-Explorer: Towards Efficient and Affordable LLM-based Exploration for Mobile Apps. | Shanhui Zhao, Hao Wen, Wenjie Du, Cheng Liang, Yunxin Liu, Xiaozhou Ye, Ye Ouyang, Yuanchun Li |
| 2025 | Mobisys | AutoDroid-V2: Boosting SLM-based GUI Agents via Code Generation. | Hao Wen, Shizuo Tian, Borislav Pavlov, Wenjie Du, Yixuan Li, Ge Chang, Shanhui Zhao, Jiacheng Liu, Yunxin Liu, Ya-Qin Zhang, Yuanchun Li |
| 2025 | SENSYS | Demo Abstract: An LLM-Powered Multimodal Mobile Sensing System for Personalized and Interactive Health Behavior Analysis. | Liyu Zhang, Yizhen Wang, Wenjie Du, Kwun Ho Liu, Xiaomin Ouyang |
| 2024 | ACL | MolTC: Towards Molecular Relational Modeling In Language Models. | Junfeng Fang, Shuai Zhang, Chang Wu, Zhengyi Yang, Zhiyuan Liu, Sihang Li, Kun Wang, Wenjie Du, Xiang Wang |
| 2024 | IJCAI | MMGNN: A Molecular Merged Graph Neural Network for Explainable Solvation Free Energy Prediction. | Wenjie Du, Shuai Zhang, Di Wu, Jun Xia, Ziyuan Zhao, Junfeng Fang, Yang Wang |
| 2024 | Mobisys | Poster: Enabling Agent-centric Interaction on Smartphones with LLM-based UI Reassembling. | Hao Wen, Wenjie Du, Yuanchun Li, Yunxin Liu |
| 2021 | QRS | Trustworthiness Derivation Tree: A Model of Evidence-Based Software Trustworthiness. | Yuxin Deng, Zezhong Chen, Wenjie Du, Bifei Mao, Zhizhang Liang, Qiushi Lin, Jinghui Li |
| 2020 | ICTAC | Qsimulation V2.0: An Optimized Quantum Simulator. | Hua Wu, Yuxin Deng, Ming Xu, Wenjie Du |
| 2020 | TACAS | Verifying Quantum Communication Protocols with Ground Bisimulation. | Xudong Qin, Yuxin Deng, Wenjie Du |
| 2016 | SETTA | Behavioural Pseudometrics for Nondeterministic Probabilistic Systems. | Wenjie Du, Yuxin Deng, Daniel Gebler |
| 2006 | CSCWD | Realization of Multilayer Occlusion between Real and Virtual Scenes in Augmented Reality. | Yan Feng, Wenjie Du, Xiaoqi Guan, Fei Gao, Yimin Chen |