| 2026 | COCOON | Sorting Sequences by Symmetric Reversals. | Yu-Heng Su, Jhih-Ming Yang, Wing-Kai Hon |
| 2026 | CPM | Efficient Index for Square Pattern Matching. | Po-Chun Chen, Che-Wei Tsao, Wing-Kai Hon, Dominik Kppl |
| 2026 | DCC | Enumeration of Unbordered Words in Compressed Representation. | Che-Wei Tsao, Yi-Hua Lin, Wing-Kai Hon, Dominik Kppl |
| 2025 | CIAC | Supereulerian Testing on Semi-Eulerian Graphs. | Wing-Kai Hon, Meng-Tsung Tsai, Ching-Yu Yang |
| 2024 | DCC | τλ-Index: Locating Rare Patterns in Similar Strings. | Long-Qi Chen, Che-Wei Tsao, Jin Jie Deng, Wing-Kai Hon, Kunihiko Sadakane |
| 2024 | PAKDD | RPH-PGD: Randomly Projected Hessian for Perturbed Gradient Descent. | Chi-Chang Li, Jay Huang, Wing-Kai Hon, Che-Rung Lee |
| 2023 | WADS | Verifying the Product of Generalized Boolean Matrix Multiplication and Its Applications to Detect Small Subgraphs. | Wing-Kai Hon, Meng-Tsung Tsai, Hung-Lung Wang |
| 2023 | WADS | Colored Constrained Spanning Tree on Directed Graphs. | Hung-Yeh Lee, Hsuan-Yu Liao, Wing-Kai Hon |
| 2022 | DCC | FM-Indexing Grammars Induced by Suffix Sorting for Long Patterns. | Jin Jie Deng, Wing-Kai Hon, Dominik Kppl, Kunihiko Sadakane |
| 2021 | COCOON | General Max-Min Fair Allocation. | Sheng-Yen Ko, Ho-Lin Chen, Siu-Wing Cheng, Wing-Kai Hon, Chung-Shou Liao |
| 2019 | DCC | Parameterized Text Indexing with One Wildcard. | Arnab Ganguly, Wing-Kai Hon, Yu-An Huang, Solon P. Pissis, Rahul Shah, Sharma V. Thankachan |
| 2019 | TrustCom | Optimal File Dissemination Scheduling Under a General Binary Tree of Trust Relationship. | Yun-Ping Tien, Wei-Chen Lin, Jan-Ming Ho, Wing-Kai Hon |
| 2018 | COCOON | A Linear-Space Data Structure for Range-LCP Queries in Poly-Logarithmic Time. | Paniz Abedin, Arnab Ganguly, Wing-Kai Hon, Yakov Nekrich, Kunihiko Sadakane, Rahul Shah, Sharma V. Thankachan |
| 2018 | DCC | Compact Encoding for Galled-Trees and Its Applications. | Kuang-Yu Chang, Wing-Kai Hon, Sharma V. Thankachan |
| 2017 | DCC | Stabbing Colors in One Dimension. | Arnab Ganguly, Wing-Kai Hon, Rahul Shah |
| 2016 | COCOA | Convex Independence in Permutation Graphs. | Wing-Kai Hon, Ton Kloks, Fu-Hong Liu, Hsiang-Hsuan Liu |
| 2016 | CPM | Space-Efficient Dictionaries for Parameterized and Order-Preserving Pattern Matching. | Arnab Ganguly, Wing-Kai Hon, Kunihiko Sadakane, Rahul Shah, Sharma V. Thankachan, Yilin Yang |
| 2016 | DCC | Practical Index Framework for Efficient Time-Travel Phrase Queries on Versioned Documents. | Chun-Ting Kuo, Wing-Kai Hon |
| 2016 | ISAAC | Space-Time Trade-Offs for the Shortest Unique Substring Problem. | Arnab Ganguly, Wing-Kai Hon, Rahul Shah, Sharma V. Thankachan |
| 2016 | WALCOM | Efficient Generation of Top-k Procurements in a Multi-item Auction. | Biswajit Sanyal, Subhashis Majumder, Wing-Kai Hon |
| 2015 | CPM | Dictionary Matching with Uneven Gaps. | Wing-Kai Hon, Tak Wah Lam, Rahul Shah, Sharma V. Thankachan, Hing-Fung Ting, Yilin Yang |
| 2015 | ISAAC | An In-place Framework for Exact and Approximate Shortest Unique Substring Queries. | Wing-Kai Hon, Sharma V. Thankachan, Bojian Xu |
| 2014 | AAIM | Edge-Clique Covers of the Tensor Product. | Wing-Kai Hon, Ton Kloks, Hsiang-Hsuan Liu, Yue-Li Wang |
| 2014 | COCOA | Top - K Query Retrieval of Combinations with Sum-of-Subsets Ranking. | Subhashis Majumder, Biswajit Sanyal, Prosenjit Gupta, Soumik Sinha, Shiladitya Pande, Wing-Kai Hon |
| 2014 | DATE | Yield and timing constrained spare TSV assignment for three-dimensional integrated circuits. | Yu-Guang Chen, Kuan-Yu Lai, Ming-Chao Lee, Yiyu Shi, Wing-Kai Hon, Shih-Chieh Chang |
| 2014 | INFOCOM | Rendezvous for heterogeneous spectrum-agile devices. | Shan-Hung Wu, Ching-Chan Wu, Wing-Kai Hon, Kang G. Shin |
| 2014 | WALCOM | Results on Independent Sets in Categorical Products of Graphs, the Ultimate Categorical Independence Ratio and the Ultimate Categorical Independent Domination Ratio. | Wing-Kai Hon, Ton Kloks, Ching-Hao Liu, Hsiang-Hsuan Liu, Sheung-Hung Poon, Yue-Li Wang |
| 2013 | COCOA | Scheduling for Electricity Cost in Smart Grid. | Mihai Burcea, Wing-Kai Hon, Hsiang-Hsuan Liu, Prudence W. H. Wong, David K. Y. Yau |
| 2013 | COCOA | On Complexities of Minus Domination. | Lurbio Faria, Wing-Kai Hon, Ton Kloks, Hsiang-Hsuan Liu, Tao-Ming Wang, Yue-Li Wang |
| 2013 | CPM | New Algorithms for Position Heaps. | Travis Gagie, Wing-Kai Hon, Tsung-Han Ku |
| 2013 | CPM | Space-Efficient Construction Algorithm for the Circular Suffix Tree. | Wing-Kai Hon, Tsung-Han Ku, Rahul Shah, Sharma V. Thankachan |
| 2013 | DCC | Space-Efficient Construction Algorithm for the Circular Suffix Tree. | Wing-Kai Hon, Tsung-Han Ku, Rahul Shah, Sharma V. Thankachan |
| 2013 | DCC | Faster Compressed Top-k Document Retrieval. | Wing-Kai Hon, Sharma V. Thankachan, Rahul Shah, Jeffrey Scott Vitter |
| 2013 | FCT | On Independence Domination. | Wing-Kai Hon, Ton Kloks, Hsiang-Hsuan Liu, Sheung-Hung Poon, Yue-Li Wang |
| 2013 | WADS | Compressed Persistent Index for Efficient Rank/Select Queries. | Wing-Kai Hon, Lap-Kei Lee, Kunihiko Sadakane, Konstantinos Tsakalidis |
| 2012 | CPM | Efficient Algorithm for Circular Burrows-Wheeler Transform. | Wing-Kai Hon, Tsung-Han Ku, Chen-Hua Lu, Rahul Shah, Sharma V. Thankachan |
| 2012 | CPM | Towards an Optimal Space-and-Query-Time Index for Top-k Document Retrieval. | Wing-Kai Hon, Rahul Shah, Sharma V. Thankachan |
| 2012 | CPM | Document Listing for Queries with Excluded Pattern. | Wing-Kai Hon, Rahul Shah, Sharma V. Thankachan, Jeffrey Scott Vitter |
| 2012 | INFOCOM | Memory-efficient pattern matching architectures using perfect hashing on graphic processing units. | Cheng-Hung Lin, Chen-Hsiung Liu, Shih-Chieh Chang, Wing-Kai Hon |
| 2011 | DCC | Compressed Dictionary Matching with One Error. | Wing-Kai Hon, Tsung-Han Ku, Rahul Shah, Sharma V. Thankachan, Jeffrey Scott Vitter |
| 2011 | DCC | Compressed Property Suffix Trees. | Wing-Kai Hon, Manish Patil, Rahul Shah, Sharma V. Thankachan |
| 2011 | ISAAC | Succinct Indexes for Circular Patterns. | Wing-Kai Hon, Chen-Hua Lu, Rahul Shah, Sharma V. Thankachan |
| 2011 | SIGIR | Inverted indexes for phrases and strings. | Manish Patil, Sharma V. Thankachan, Rahul Shah, Wing-Kai Hon, Jeffrey Scott Vitter, Sabrina Chandrasekaran |
| 2011 | SPIRE | Compressed Text Indexing with Wildcards. | Wing-Kai Hon, Tsung-Han Ku, Rahul Shah, Sharma V. Thankachan, Jeffrey Scott Vitter |
| 2010 | CPM | Compression, Indexing, and Retrieval for Massive String Data. | Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter |
| 2010 | DCC | I/O-Efficient Compressed Text Indexes: From Theory to Practice. | Sheng-Yuan Chiu, Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter |
| 2010 | DCC | Compressed Indexes for Approximate Library Management. | Wing-Kai Hon, Winson Wu, Ting-Shuo Yang |
| 2010 | FUN | Cryptographic and Physical Zero-Knowledge Proof: From Sudoku to Nonogram. | Yu-Feng Chien, Wing-Kai Hon |
| 2010 | SECON | Optimizing Link Assignment to Enhance Service in Probabilistic Network. | Fredrick J. Berchmans, Wing-Kai Hon, Abner C. Y. Huang, Chih-Shan Liu, Eric Lo, David K. Y. Yau |
| 2010 | SPIRE | Faster Compressed Dictionary Matching. | Wing-Kai Hon, Tsung-Han Ku, Rahul Shah, Sharma V. Thankachan, Jeffrey Scott Vitter |
| 2010 | SPIRE | String Retrieval for Multi-pattern Queries. | Wing-Kai Hon, Rahul Shah, Sharma V. Thankachan, Jeffrey Scott Vitter |
| 2009 | COCOON | Efficient Data Structures for the Orthogonal Range Successor Problem. | Chih-Chiang Yu, Wing-Kai Hon, Biing-Feng Wang |
| 2009 | FOCS | Space-Efficient Framework for Top-k String Retrieval Problems. | Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter |
| 2009 | ICCAD | Value assignment of adjustable delay buffers for clock skew minimization in multi-voltage mode designs. | Yu-Shih Su, Wing-Kai Hon, Cheng-Chih Yang, Shih-Chieh Chang, Yeong-Jar Chang |
| 2009 | ISAAC | Succinct Index for Dynamic Dictionary Matching. | Wing-Kai Hon, Tak Wah Lam, Rahul Shah, Siu-Lung Tam, Jeffrey Scott Vitter |
| 2009 | SPIRE | On Entropy-Compressed Text Indexing in External Memory. | Wing-Kai Hon, Rahul Shah, Sharma V. Thankachan, Jeffrey Scott Vitter |
| 2009 | SPIRE | Efficient Index for Retrieving Top-k Most Frequent Documents. | Wing-Kai Hon, Rahul Shah, Shih-Bin Wu |
| 2008 | DCC | Geometric Burrows-Wheeler Transform: Linking Range Searching and Text Indexing. | Yu-Feng Chien, Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter |
| 2008 | DCC | Compressed Index for Dictionary Matching. | Wing-Kai Hon, Tak Wah Lam, Rahul Shah, Siu-Lung Tam, Jeffrey Scott Vitter |
| 2008 | EDBT | The SBC-tree: an index for run-length compressed sequences. | Mohamed Y. Eltabakh, Wing-Kai Hon, Rahul Shah, Walid G. Aref, Jeffrey Scott Vitter |
| 2008 | SPAA | Tight competitive ratios for parallel disk prefetching and caching. | Wing-Kai Hon, Rahul Shah, Peter J. Varman, Jeffrey Scott Vitter |
| 2007 | CPM | Cache-Oblivious Index for Approximate String Matching. | Wing-Kai Hon, Tak Wah Lam, Rahul Shah, Siu-Lung Tam, Jeffrey Scott Vitter |
| 2007 | ESA | A Faster Query Algorithm for the Text Fingerprinting Problem. | Chi-Yuan Chan, Hung-I Yu, Wing-Kai Hon, Biing-Feng Wang |
| 2007 | ICALP | A Framework for Dynamizing Succinct Data Structures. | Ankur Gupta, Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter |
| 2007 | IWQoS | On Area of Interest Coverage in Surveillance Mobile Sensor Networks. | Yu Dong, Wing-Kai Hon, David K. Y. Yau |
| 2007 | MASCOTS | Distance Reduction in Mobile Wireless Communication: Lower Bound Analysis and Practical Attainment. | Yu Dong, Wing-Kai Hon, David K. Y. Yau, Jren-Chit Chin |
| 2007 | MASS | On Intelligent Mobile Target Detection in a Mobile Sensor Network. | Jren-Chit Chin, Yu Dong, Wing-Kai Hon, David K. Y. Yau |
| 2006 | DCC | Compressed Data Structures: Dictionaries and Data-Aware Measures. | Ankur Gupta, Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter |
| 2005 | SODA | Dynamic dictionary matching and compressed suffix trees. | Ho-Leung Chan, Wing-Kai Hon, Tak Wah Lam, Kunihiko Sadakane |
| 2004 | ALENEX | Practical aspects of Compressed Suffix Arrays and FM-Index in Searching DNA Sequences. | Wing-Kai Hon, Tak Wah Lam, Wing-Kin Sung, Wai-Leuk Tse, Chi-Kwong Wong, Siu-Ming Yiu |
| 2004 | CPM | Compressed Index for a Dynamic Collection of Texts. | Ho-Leung Chan, Wing-Kai Hon, Tak Wah Lam |
| 2004 | CPM | Approximate String Matching Using Compressed Suffix Arrays. | Trinh N. D. Huynh, Wing-Kai Hon, Tak Wah Lam, Wing-Kin Sung |
| 2004 | DCC | Compressed Index for Dynamic Text. | Wing-Kai Hon, Tak Wah Lam, Kunihiko Sadakane, Wing-Kin Sung, Siu-Ming Yiu |
| 2003 | COCOON | On All-Substrings Alignment Problems. | Wei Fu, Wing-Kai Hon, Wing-Kin Sung |
| 2003 | FOCS | Breaking a Time-and-Space Barrier in Constructing Full-Text Indices. | Wing-Kai Hon, Kunihiko Sadakane, Wing-Kin Sung |
| 2003 | ISAAC | Constructing Compressed Suffix Arrays with Large Alphabets. | Wing-Kai Hon, Tak Wah Lam, Kunihiko Sadakane, Wing-Kin Sung |
| 2003 | ISAAC | Succinct Data Structures for Searchable Partial Sums. | Wing-Kai Hon, Kunihiko Sadakane, Wing-Kin Sung |
| 2002 | CPM | Space-Economical Algorithms for Finding Maximal Unique Matches. | Wing-Kai Hon, Kunihiko Sadakane |
| 2000 | ISAAC | Improved Phylogeny Comparisons: Non-shared Edges, Nearest Neighbor Interchanges, and Subtree Transfers. | Wing-Kai Hon, Ming-Yang Kao, Tak Wah Lam |
| 1999 | COCOON | Approximating the Nearest Neighbor Interchange Distance for Evolutionary Trees with Non-uniform Degrees. | Wing-Kai Hon, Tak Wah Lam |