| 2026 | AIME | SemAS - Semantic Alignment Score for XAI Applications in Clinical Decision Support. | Laura Bergomi, Martin Michalowski, Szymon Wilk, Marc Carrier, Grgoire Le Gal, Tzu-Fei Wang, Wojtek Michalowski |
| 2026 | ISMIS | ReMemDiff: Multi-label Lifelong Machine Learning Using Deep Generative Replay. | Mohammed Awal Kassim, Herna L. Viktor, Wojtek Michalowski |
| 2025 | AIME | CUE-X: A Framework for the Automatic Evaluation of Clinical Usefulness of Explanations for the Multimorbidity Problem. | Martin Michalowski, Szymon Wilk, Jenny M. Bauer, Marc Carrier, Herna L. Viktor, Wojtek Michalowski |
| 2025 | IJCNN | Protein structure generation using a variational autoencoder with Lvy noise and quantum graph transformer. | Eric Paquet, Herna L. Viktor, Wojtek Michalowski |
| 2024 | AIME | Manually-Curated Versus LLM-Generated Explanations for Complex Patient Cases: An Exploratory Study with Physicians. | Martin Michalowski, Szymon Wilk, Jenny M. Bauer, Marc Carrier, Aurelien Delluc, Grgoire Le Gal, Tzu-Fei Wang, Deborah Siegal, Wojtek Michalowski |
| 2022 | AIME | Towards an AI Planning-Based Pipeline for the Management of Multimorbid Patients. | Malvika Rao, Martin Michalowski, Szymon Wilk, Wojtek Michalowski, Amanda Jane Coles, Marc Carrier |
| 2021 | AIME | MitPlan 2.0: Enhanced Support for Multi-morbid Patient Management Using Planning. | Martin Michalowski, Malvika Rao, Szymon Wilk, Wojtek Michalowski, Marc Carrier |
| 2021 | AMIA | Towards a framework for comparing functionalities of multimorbidity clinical decision support: A literature-based feature set and benchmark cases. | Dympna O'Sullivan, William Van Woensel, Szymon Wilk, Samson W. Tu, Wojtek Michalowski, Samina Abidi, Marc Carrier, Ruth Edry, Irit Hochberg, Stephen P. Kingwell, Alexandra Kogan, Martin Michalowski, Hugh O'Sullivan, Mor Peleg |
| 2021 | IJCNN | Paying Attention: Using a Siamese Pyramid Network for the Prediction of Protein-Protein Interactions with Folding and Self-Binding Primary Sequences. | Junzheng Wu, Eric Paquet, Herna L. Viktor, Wojtek Michalowski |
| 2021 | RE | Creating Mobile Self-Triage Applications: Requirements and Usability Perspectives. | Mir Kamyar Ziabari, Daniel Amyot, Wojtek Michalowski, El Mostafa Bouattane, Nassoh Hafez |
| 2020 | ICDM | Multi-class imbalanced semi-supervised learning from streams through online ensembles. | Parsa Vafaie, Herna L. Viktor, Wojtek Michalowski |
| 2019 | AIME | MitPlan: A Planning Approach to Mitigating Concurrently Applied Clinical Practice Guidelines. | Martin Michalowski, Szymon Wilk, Wojtek Michalowski, Marc Carrier |
| 2019 | AMIA | Data Requirements for a Patient-Centered Learning Health System. | Lysanne Lessard, Antoine Saur, Agnes Grudniewicz, William Gardner, James King, Wojtek Michalowski, David Murphy, Kathleen Pajer, Elyse Schipper, Sinthuja Suntharalingam, Raphal Mnard-Grenier, Michael Cheng |
| 2019 | AMIA | How Do Spinal Surgeons Perceive The Impact of Factors Used in Post-Surgical Complication Risk Scores? | Enea Parimbelli, Szymon Wilk, Dympna O'Sullivan, Stephen P. Kingwell, Wojtek Michalowski, Martin Michalowski |
| 2018 | AMIA | Representing Drug Classes for Mitigating Concurrently Applied CPGs. | Martin Michalowski, Szymon Wilk, Wojtek Michalowski, Marc Carrier |
| 2018 | AMIA | Shared Decision-Making Ontology for a Healthcare Team Executing a Workflow, an Instantiation for Metastatic Spinal Cord Compression Management. | Enea Parimbelli, Szymon Wilk, Stephen P. Kingwell, Pavel Andreev, Wojtek Michalowski |
| 2017 | AAAI | AFGuide System to Support Personalized Management of Atrial Fibrillation. | Martin Michalowski, Wojtek Michalowski, Szymon Wilk, Dympna O'Sullivan, Marc Carrier |
| 2017 | EUSPN | Supporting process execution by interdisciplinary healthcare teams: Middleware design for IBM BPM. | Nihan atal, Daniel Amyot, Wojtek Michalowski, Mounira Kezadri-Hamiaz, Malak Baslyman, Szymon Wilk, Randy Giffen |
| 2016 | AMIA | Predictive Analytics to Support Real-Time Management in Pathology Facilities. | Lysanne Lessard, Wojtek Michalowski, Wei Chen Li, Fawaz Halwani, Daniel Amyot, Diponkar Banerjee |
| 2016 | CBMS | Aligning Interdisciplinary Healthcare Team Behavior with Workflow Execution: An Example of a Radical Prostatectomy Workflow. | Szymon Wilk, Dympna O'Sullivan, Mounira Kezadri-Hamiaz, Craig E. Kuziemsky, Daniela Rosu, Wojtek Michalowski, Michael Fung Kee Fung |
| 2015 | AMIA | Expanding a First-Order Logic Mitigation Framework to Handle Multimorbid Patient Preferences. | Martin Michalowski, Szymon Wilk, Daniela Rosu, Mounira Kezadri, Wojtek Michalowski, Marc Carrier |
| 2015 | AMIA | Developing the Pathologists' Monthly Assignment Schedule: A Case Study at the Division of Anatomical Pathology of The Ottawa Hospital. | Amine Montazeri, Jonathan Patrick, Wojtek Michalowski, Diponkar Banerjee |
| 2014 | AMIA | A Framework for Incorporating Patient Preferences to Deliver Participatory Medicine via Interdisciplinary Healthcare Teams. | Craig E. Kuziemsky, Davood Astaraky, Szymon Wilk, Wojtek Michalowski, Pavel Andreev |
| 2014 | AMIA | First-Order Logic Theory for Manipulating Clinical Practice Guidelines Applied to Comorbid Patients: A Case Study. | Martin Michalowski, Szymon Wilk, Xing Tan, Wojtek Michalowski |
| 2014 | BPM | MET4: Supporting Workflow Execution for Interdisciplinary Healthcare Teams. | Szymon Wilk, Davood Astaraky, Wojtek Michalowski, Daniel Amyot, Runzhuo Li, Craig E. Kuziemsky, Pavel Andreev |
| 2013 | AIME | Using Constraint Logic Programming to Implement Iterative Actions and Numerical Measures during Mitigation of Concurrently Applied Clinical Practice Guidelines. | Martin Michalowski, Szymon Wilk, Wojtek Michalowski, Di Lin, Ken Farion, Subhra Mohapatra |
| 2013 | AMIA | Evaluating Emergency Physicians: Data Envelopment Analysis Approach. | Javier Fiallos, Ken Farion, Wojtek Michalowski, Jonathan Patrick |
| 2012 | IPMU | Discovering the Preferences of Physicians with Regards to Rank-Ordered Medical Documents. | Dympna O'Sullivan, Szymon Wilk, Wojtek Michalowski, Roman Slowinski, Roland Thomas, Ken Farion |
| 2011 | AI | Classifying Severely Imbalanced Data. | William Klement, Szymon Wilk, Wojtek Michalowski, Stan Matwin |
| 2011 | AIME | A Constraint Logic Programming Approach to Identifying Inconsistencies in Clinical Practice Guidelines for Patients with Comorbidity. | Martin Michalowski, Marisela Mainegra Hing, Szymon Wilk, Wojtek Michalowski, Ken Farion |
| 2008 | AMIA | A Constraint Satisfaction Approach to Data-Driven Implementation of Clinical Practice Guidelines. | Craig E. Kuziemsky, Dympna O'Sullivan, Wojtek Michalowski, Szymon Wilk, Ken Farion |
| 2008 | AMIA | Engineering of a Clinical Decision Support Framework for the Point of Care Use. | Szymon Wilk, Wojtek Michalowski, Dympna O'Sullivan, Ken Farion, Stan Matwin |
| 2007 | AIME | A Concept-Based Framework for Retrieving Evidence to Support Emergency Physician Decision Making at the Point of Care. | Dympna O'Sullivan, Ken Farion, Stan Matwin, Wojtek Michalowski, Szymon Wilk |
| 2005 | AIME | Mining Clinical Data: Selecting Decision Support Algorithm for the MET-AP System. | Jerzy Blaszczynski, Ken Farion, Wojtek Michalowski, Szymon Wilk, Steven Rubin, Dawid Weiss |
| 2004 | AAAI | Mobile Emergency Triage Support System. | Wojtek Michalowski, Roman Slowinski, Szymon Wilk |