| 2015 | CIKM | Cell line specific method based on functional modules for drug sensitivity prediction. | Woochang Hwang, Jaejoon Choi, Mijin Kwon, Doheon Lee |
| 2013 | CIKM | BSML: bio-synergy modeling language for multi-component and multi-target analysis. | Woochang Hwang, Jaejoon Choi, Jinmyung Jung, Doheon Lee |
| 2012 | CIKM | Rule-based whole body modeling for analyzing multi-compound effects. | Woochang Hwang, Yongdeuk Hwang, Sunjae Lee, Doheon Lee |
| 2010 | BIBE | Computational Framework for Microstructural Bone Dynamics Model and Its Evaluation. | Taehyong Kim, Woochang Hwang, Aidong Zhang, Murali Ramanathan |
| 2008 | KDD | Bridging centrality: graph mining from element level to group level. | Woochang Hwang, Taehyong Kim, Murali Ramanathan, Aidong Zhang |
| 2007 | BIBE | Optimizing Flow-based Modularization by Iterative Centroid Search in Protein Interaction Networks. | Young-Rae Cho, Woochang Hwang, Aidong Zhang |
| 2007 | BIBE | SIGN: reliable protein interaction identification by integrating the Similarity In GO and the similarity in protein interaction Networks. | Woochang Hwang, Taehyong Kim, Young-Rae Cho, Aidong Zhang, Murali Ramanathan |
| 2007 | CIBCB | Modularization of Protein Interaction Networks by Incorporating Gene Ontology Annotations. | Young-Rae Cho, Woochang Hwang, Aidong Zhang |
| 2007 | ICDM | Assessing Reliability of Protein-Protein Interactions by Semantic Data Integration. | Young-Rae Cho, Woochang Hwang, Aidong Zhang |
| 2007 | ICMLA | Feature Extraction from Microarray Expression Data by Integration of Semantic Knowledge. | Young-Rae Cho, Xian Xu, Woochang Hwang, Aidong Zhang |
| 2006 | BIBE | Efficient Modularization of Weighted Protein Interaction Networks using k-Hop Graph Reduction. | Young-Rae Cho, Woochang Hwang, Aidong Zhang |
| 2006 | ICDM | Identification of Overlapping Functional Modules in Protein Interaction Networks: Information Flow-based Approach. | Young-Rae Cho, Woochang Hwang, Aidong Zhang |