| 2026 | ACL | ClinDet-Bench: Beyond Abstention, Evaluating Judgment Determinability of LLMs in Clinical Decision-Making. | Yusuke Watanabe, Yohei Kobashi, Takeshi Kojima, Yusuke Iwasawa, Yasushi Okuno, Yutaka Matsuo |
| 2025 | CCGRID | Diverse, Stable, and Efficient All-Atom Structure Sampling Based on Parallelized Coarse-Grained Elastic Network Model. | Shingo Okuno, Yuta Yoshimoto, Nana Takeda, Yusuke Nagasaka, Ryo Kanada, Atsushi Tokuhisa, Yasushi Okuno |
| 2023 | MICCAI | An Auto-Encoder to Reconstruct Structure with Cryo-EM Images via Theoretically Guaranteed Isometric Latent Space, and Its Application for Automatically Computing the Conformational Pathway. | Kimihiro Yamazaki, Yuichiro Wada, Atsushi Tokuhisa, Mutsuyo Wada, Takashi Katoh, Yuhei Umeda, Yasushi Okuno, Akira Nakagawa |
| 2012 | CiE | On the Behavior of Tile Assembly System at High Temperatures. | Shinnosuke Seki, Yasushi Okuno |
| 2005 | ECCB | A probabilistic model for mining implicit 'chemical compound-gene' relations from literature. | Shanfeng Zhu, Yasushi Okuno, Gozoh Tsujimoto, Hiroshi Mamitsuka |