| 2024 | SIGIR | Embedding Based Deduplication in E-commerce AutoComplete. | Shaodan Zhai, Yuwei Chen, Yixue Li |
| 2013 | SAC | Applying software product line engineering in building web portals for supercomputing services. | Piyush Diwan, Patricia Carey, Eric Franz, Yixue Li, Thomas Bitterman, David E. Hudak, Rajiv Ramnath |
| 2008 | RECOMB | A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. | Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang |
| 2007 | ICCS | Ab-origin: An Improved Tool of Heavy Chain Rearrangement Analysis for Human Immunoglobulin. | Xiaojing Wang, Wu Wei, Siyuan Zheng, Zhi-Wei Cao, Yixue Li |
| 2007 | SC | Biological data integration and high-performance computing. | Yixue Li |
| 2006 | APSCC | On Loan-to-Value Ratios of Inventory Financing with Doubly Stochastic Poisson Default Processes. | Yixue Li, Yu Xu, Gengzhong Feng, Wenqiang Dai |
| 2005 | IJCNN | Prediction of contact map integrated PNN with conformational energy. | Peng Chen, De-Shuang Huang, Bing Wang, Yunping Zhu, Yixue Li |
| 2005 | IJCNN | Predicting protein-protein interactions based on protein-domain relationships. | Bing Wang, De-Shuang Huang, Peng Chen, Yunping Zhu, Yixue Li |