| 2013 | SPIRE | Solving Graph Isomorphism Using Parameterized Matching. | Juan Mendivelso, Sunghwan Kim, Sameh Elnikety, Yuxiong He, Seung-won Hwang, Yoan J. Pinzn |
| 2012 | SPIRE | Approximate Function Matching under δ- and γ- Distances. | Juan Mendivelso, Inbok Lee, Yoan J. Pinzn |
| 2010 | AICCSA | An algorithm for Constrained LCS. | David Becerra, Wilson Soto, Luis F. Nio, Yoan J. Pinzn |
| 2008 | SPIRE | delta-gamma-Parameterized Matching. | Inbok Lee, Juan Mendivelso, Yoan J. Pinzn |
| 2005 | SOFSEM | Fast Bit-Vector Algorithms for Approximate String Matching Under Indel Distance. | Heikki Hyyr, Yoan J. Pinzn, Ayumi Shinohara |
| 2004 | SPIRE | Bit-Parallel Branch and Bound Algorithm for Transposition Invariant LCS. | Kjell Lemstrm, Gonzalo Navarro, Yoan J. Pinzn |
| 2003 | SPIRE | A Bit-Parallel Suffix Automation Approach for (delta, gamma)-Matching in Music Retrieval. | Maxime Crochemore, Costas S. Iliopoulos, Gonzalo Navarro, Yoan J. Pinzn |
| 2001 | SPIRE | Speeding-up Hirschberg and Hunt-Szymanski LCS Algorithms. | Maxime Crochemore, Costas S. Iliopoulos, Yoan J. Pinzn |
| 2000 | SOFSEM | Fast Evolutionary Chains. | Maxime Crochemore, Costas S. Iliopoulos, Yoan J. Pinzn |