| 2025 | MICCAI | UFO-3: Unsupervised Three-Compartment Learning for Fiber Orientation Distribution Function Estimation. | Xueqing Gao, Rizhong Lin, Jianhui Feng, Yonggang Shi, Yuchuan Qiao |
| 2025 | MICCAI | Multistage Alignment and Fusion for Multimodal Multiclass Alzheimer's Disease Diagnosis. | Shuo Huang, Lujia Zhong, Yonggang Shi |
| 2025 | MICCAI | Robust Topographical Representation for Longitudinal Propagation of Tau Pathology. | Jiaxin Yue, Jianwei Zhang, Xinkai Wang, Yonggang Shi |
| 2025 | MICCAI | GPU Accelerated Modeling of Cortical Radial and Tangential Connectivity Changes in Neurodegeneration. | Hongbo Zhang, Xinyu Nie, Jiaxin Yue, Yuan Li, John M. Ringman, Yonggang Shi |
| 2025 | MICCAI | Surface-Based Multi-axis Longitudinal Disentanglement Using Contrastive Learning for Alzheimer's Disease. | Jianwei Zhang, Yonggang Shi |
| 2025 | MICCAI | EU-Net: Efficient Training of U-Net for Biomedical Image Segmentation. | Lujia Zhong, Shuo Huang, Yonggang Shi |
| 2024 | MICCAI | Surface-Based and Shape-Informed U-Fiber Atlasing for Robust Superficial White Matter Connectivity Analysis. | Yuan Li, Xinyu Nie, Jianwei Zhang, Yonggang Shi |
| 2024 | MICCAI | Adaptive Subtype and Stage Inference for Alzheimer's Disease. | Xinkai Wang, Yonggang Shi |
| 2023 | MICCAI | Shape-Aware 3D Small Vessel Segmentation with Local Contrast Guided Attention. | Zhiwei Deng, Songnan Xu, Jianwei Zhang, Jiong Zhang, Danny J. J. Wang, Lirong Yan, Yonggang Shi |
| 2023 | MICCAI | Automated Mapping of Residual Distortion Severity in Diffusion MRI. | Shuo Huang, Lujia Zhong, Yonggang Shi |
| 2023 | MICCAI | FASSt: Filtering via Symmetric Autoencoder for Spherical Superficial White Matter Tractography. | Yuan Li, Xinyu Nie, Yao Fu, Yonggang Shi |
| 2023 | MICCAI | Flow-Based Geometric Interpolation of Fiber Orientation Distribution Functions. | Xinyu Nie, Yonggang Shi |
| 2023 | MICCAI | A Groupwise Method for the Reconstruction of Hypergraph Representation of Resting-State Functional Networks. | Mingyang Xia, Yonggang Shi |
| 2023 | MICCAI | Uncovering Heterogeneity in Alzheimer's Disease from Graphical Modeling of the Tau Spatiotemporal Topography. | Jiaxin Yue, Yonggang Shi |
| 2023 | MICCAI | Personalized Patch-Based Normality Assessment of Brain Atrophy in Alzheimer's Disease. | Jianwei Zhang, Yonggang Shi |
| 2022 | MICCAI | Personalized dMRI Harmonization on Cortical Surface. | Yihao Xia, Yonggang Shi |
| 2021 | MICCAI | Dynamic Sub-graph Learning for Patch-Based Cortical Folding Classification. | Zhiwei Deng, Jiong Zhang, Yonggang Shi |
| 2021 | MICCAI | Personalized Matching and Analysis of Cortical Folding Patterns via Patch-Based Intrinsic Brain Mapping. | Jiong Zhang, Yonggang Shi |
| 2020 | MICCAI | Unsupervised Deep Learning for Susceptibility Distortion Correction in Connectome Imaging. | Yuchuan Qiao, Yonggang Shi |
| 2019 | MICCAI | Surface-Based Tracking of U-Fibers in the Superficial White Matter. | Jin-Kyu Gahm, Yonggang Shi |
| 2019 | MICCAI | Topographic Filtering of Tractograms as Vector Field Flows. | Xinyu Nie, Yonggang Shi |
| 2019 | MICCAI | 3D Surface-Based Geometric and Topological Quantification of Retinal Microvasculature in OCT-Angiography via Reeb Analysis. | Jiong Zhang, Amir H. Kashani, Yonggang Shi |
| 2018 | MICCAI | Patch-Based Mapping of Transentorhinal Cortex with a Distributed Atlas. | Jin-Kyu Gahm, Yuchun Tang, Yonggang Shi |
| 2018 | MICCAI | FOD-Based Registration for Susceptibility Distortion Correction in Connectome Imaging. | Yuchuan Qiao, Wei Sun, Yonggang Shi |
| 2018 | MICCAI | GIFE: Efficient and Robust Group-Wise Isometric Fiber Embedding. | Junyan Wang, Yonggang Shi |
| 2017 | MICCAI | Holistic Mapping of Striatum Surfaces in the Laplace-Beltrami Embedding Space. | Jin-Kyu Gahm, Yonggang Shi |
| 2017 | MICCAI | FOD Restoration for Enhanced Mapping of White Matter Lesion Connectivity. | Wei Sun, Lilyana Amezcua, Yonggang Shi |
| 2017 | MICCAI | A Whole-Brain Reconstruction Approach for FOD Modeling from Multi-Shell Diffusion MRI. | Wei Sun, Junling Li, Yonggang Shi |
| 2017 | MICCAI | Kernel-Regularized ICA for Computing Functional Topography from Resting-State fMRI. | Junyan Wang, Yonggang Shi |
| 2016 | MICCAI | Probabilistic Tractography for Topographically Organized Connectomes. | Dogu Baran Aydogan, Yonggang Shi |
| 2016 | MICCAI | Riemannian Metric Optimization for Connectivity-Driven Surface Mapping. | Jin-Kyu Gahm, Yonggang Shi |
| 2015 | ICIP | The measurement of cell viability based on temporal bag of words for image sequences. | Fengqian Pang, Zhiwen Liu, Heng Li, Yonggang Shi |
| 2015 | MICCAI | Track Filtering via Iterative Correction of TDI Topology. | Dogu Baran Aydogan, Yonggang Shi |
| 2014 | MICCAI | Diffusion of Fiber Orientation Distribution Functions with a Rotation-Induced Riemannian Metric. | Junning Li, Yonggang Shi, Arthur W. Toga |
| 2014 | MICCAI | Persistent Reeb Graph Matching for Fast Brain Search. | Yonggang Shi, Junning Li, Arthur W. Toga |
| 2013 | MICCAI | Voxelwise Spectral Diffusional Connectivity and Its Applications to Alzheimer's Disease and Intelligence Prediction. | Junning Li, Yan Jin, Yonggang Shi, Ivo D. Dinov, Danny J. J. Wang, Arthur W. Toga, Paul M. Thompson |
| 2013 | MICCAI | Locally Weighted Multi-atlas Construction. | Junning Li, Yonggang Shi, Ivo D. Dinov, Arthur W. Toga |
| 2013 | MICCAI | Adaptively Constrained Convex Optimization for Accurate Fiber Orientation Estimation with High Order Spherical Harmonics. | Giang Tran, Yonggang Shi |
| 2012 | MICCAI | Modeling Dynamic Cellular Morphology in Images. | Xing An, Zhiwen Liu, Yonggang Shi, Ning Li, Yalin Wang, Shantanu H. Joshi |
| 2012 | MICCAI | Automatic Population HARDI White Matter Tract Clustering by Label Fusion of Multiple Tract Atlases. | Yan Jin, Yonggang Shi, Liang Zhan, Junning Li, Greig I. de Zubicaray, Katie McMahon, Nicholas G. Martin, Margaret J. Wright, Paul M. Thompson |
| 2012 | MICCAI | Fast Diffusion Tensor Registration with Exact Reorientation and Regularization. | Junning Li, Yonggang Shi, Giang Tran, Ivo D. Dinov, Danny J. J. Wang, Arthur W. Toga |
| 2012 | MICCAI | Unified Geometry and Topology Correction for Cortical Surface Reconstruction with Intrinsic Reeb Analysis. | Yonggang Shi, Rongjie Lai, Arthur W. Toga |
| 2011 | ICCV | Automated corpus callosum extraction via Laplace-Beltrami nodal parcellation and intrinsic geodesic curvature flows on surfaces. | Rongjie Lai, Yonggang Shi, Nancy L. Sicotte, Arthur W. Toga |
| 2011 | MICCAI | Heritability of White Matter Fiber Tract Shapes: A HARDI Study of 198 Twins. | Yan Jin, Yonggang Shi, Shantanu H. Joshi, Neda Jahanshad, Liang Zhan, Greig I. de Zubicaray, Katie McMahon, Nicholas G. Martin, Margaret J. Wright, Arthur W. Toga, Paul M. Thompson |
| 2011 | MICCAI | Conformal Metric Optimization on Surface (CMOS) for Deformation and Mapping in Laplace-Beltrami Embedding Space. | Yonggang Shi, Rongjie Lai, Raja Gill, Daniel Pelletier, David C. Mohr, Nancy L. Sicotte, Arthur W. Toga |
| 2010 | CVPR | Metric-induced optimal embedding for intrinsic 3D shape analysis. | Rongjie Lai, Yonggang Shi, Kevin Scheibel, Scott C. Fears, Roger P. Woods, Arthur W. Toga, Tony F. Chan |
| 2010 | ECCV | A Model of Volumetric Shape for the Analysis of Longitudinal Alzheimer's Disease Data. | Xinyang Liu, Xiuwen Liu, Yonggang Shi, Paul M. Thompson, Washington Mio |
| 2010 | MICCAI | Automated Sulci Identification via Intrinsic Modeling of Cortical Anatomy. | Yonggang Shi, Bo Sun, Rongjie Lai, Ivo D. Dinov, Arthur W. Toga |
| 2009 | ISVC | Wavelet-Based Representation of Biological Shapes. | Bin Dong, Yu Mao, Ivo D. Dinov, Zhuowen Tu, Yonggang Shi, Yalin Wang, Arthur W. Toga |
| 2009 | MICCAI | Cortical Shape Analysis in the Laplace-Beltrami Feature Space. | Yonggang Shi, Ivo D. Dinov, Arthur W. Toga |
| 2008 | CVPR | Anisotropic Laplace-Beltrami eigenmaps: Bridging Reeb graphs and skeletons. | Yonggang Shi, Rongjie Lai, Sheila Krishna, Nancy L. Sicotte, Ivo D. Dinov, Arthur W. Toga |
| 2008 | MICCAI | Models of Normal Variation and Local Contrasts in Hippocampal Anatomy. | Xinyang Liu, Washington Mio, Yonggang Shi, Ivo D. Dinov, Xiuwen Liu, Natasha Lepor, Franco Lepore, Madeleine Fortin, Patrice Voss, Maryse Lassonde, Paul M. Thompson |
| 2008 | MICCAI | Harmonic Surface Mapping with Laplace-Beltrami Eigenmaps. | Yonggang Shi, Rongjie Lai, Kyle C. Kern, Nancy L. Sicotte, Ivo D. Dinov, Arthur W. Toga |
| 2005 | CVPR | Real-Time Tracking Using Level Sets. | Yonggang Shi, William Clement Karl |
| 2005 | ICASSP | A Fast Level Set Method Without Solving PDEs. | Yonggang Shi, William Clement Karl |
| 2004 | ICASSP | Performance guarantees in sensor networks. | Venkatesh Saligrama, Yonggang Shi, William Clement Karl |
| 2004 | ICASSP | Shape reconstruction from unorganized points with a data-driven level set method. | Yonggang Shi, William Clement Karl |
| 2004 | VCIP | Multiple motion and occlusion segmentation with a multiphase level set method. | Yonggang Shi, Janusz Konrad, William Clement Karl |
| 2002 | ICASSP | Dynamic tomography with curve evolution methods. | Yonggang Shi, William Clement Karl |
| 2002 | ICIP | Dynamic tomography using curve evolution with spatial-temporal regularization. | Yonggang Shi, William Clement Karl, David A. Castan |