| 2007 | AINA | Efficiency of Hybrid Normalization of Microarray Gene Expression: A Simulation Study. | Mehdi Pirooznia, Youping Deng |
| 2007 | BIBE | An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments. | Mehdi Pirooznia, Arun Rawat, Jack Y. Yang, Mary Qu Yang, Ping Gong, Edward J. Perkins, Youping Deng |
| 2007 | BIBE | Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy A New Insight on Cell Killing and Modeling. | Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Youping Deng |
| 2007 | IKE | Web-Based Information Retrieval with Local and Global Link Analyis. | Chaoyang Zhang, Surender Dargan, Hong Lan, Youping Deng |
| 2006 | APWEB | An Integrated Web-Based Model for Management, Analysis and Retrieval of EST Biological Information. | Youping Deng, Yinghua Dong, Susan J. Brown, Chaoyang Zhang |
| 2005 | PDPTA | Parallel Virtual Screening for Prediction of Antimicrobial Activity Using Fourier Transforms. | Navodit Kaushik, Chaoyang Zhang, Beddhu Murali, Vijayaraj Nagarajan, Sanyogita Lakhera, Youping Deng |
| 2004 | SAC | FGKA: a Fast Genetic K-means Clustering Algorithm. | Yi Lu, Shiyong Lu, Farshad Fotouhi, Youping Deng, Susan J. Brown |