| 2025 | AIME | Enabling Transcriptome Classification in Micro-cohorts with Pathway-Anchoring and Single-Subject Studies. | Mahdieh Shabanian, Nima Pouladi, Liam S. Wilson, Mattia Prosperi, Yves A. Lussier |
| 2019 | AMIA | Interpretation of 'Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes. | Qike Li, Samir Rachid Zaim, Dillon Aberasturi, Joanne Berghout, Haiquan Li, Francesca Vitali, Colleen Kenost, Hao Helen Zhang, Yves A. Lussier |
| 2019 | AMIA | DSL-TEACH: Data Science Literacy Training to Enhance Approaches for Clinical decision-making in Healthcare. | Samir Rachid Zaim, Ahyoung Amy Kim, Colleen Kenost, Helen Zhang, Yves A. Lussier, Vignesh Subbian |
| 2019 | PSB | Reading between the genes: interpreting non-coding DNA in high-throughput. | Joanne Berghout, Yves A. Lussier, Francesca Vitali, Martha L. Bulyk, Maricel G. Kann, Jason H. Moore |
| 2019 | PSB | Translational informatics of population Health: How large biomolecular and clinical datasets unite. | Yves A. Lussier, Atul J. Butte, Haiquan Li, Rong Chen, Jason H. Moore |
| 2019 | PSB | Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms. | Francesca Vitali, Joanne Berghout, Jung-wei Fan, Jianrong Li, Qike Li, Haiquan Li, Yves A. Lussier |
| 2018 | AMIA | Systems of Phenome-Exposome Associations Unveiled by Mining Practice-Based Evidence with Environmental Exposures. | Jung-wei Fan, Samir Rachid Zaim, Walter W. Piegorsch, Jianrong Li, Colleen Kenost, Yves A. Lussier |
| 2018 | PSB | Single subject transcriptome analysis to identify functionally signed gene set or pathway activity. | Joanne Berghout, Qike Li, Nima Pouladi, Jianrong Li, Yves A. Lussier |
| 2018 | PSB | Convergent downstream candidate mechanisms of independent intergenic polymorphisms between co-classified diseases implicate epistasis among noncoding elements. | Jiali Han, Jianrong Li, Ikbel Achour, Lorenzo L. Pesce, Ian T. Foster, Haiquan Li, Yves A. Lussier |
| 2018 | PSB | Session Introduction. | Yves A. Lussier, Joanne Berghout, Francesca Vitali, Kenneth S. Ramos, Maricel G. Kann, Jason H. Moore |
| 2018 | PSB | Emergence of pathway-level composite biomarkers from converging gene set signals of heterogeneous transcriptomic responses. | Samir Rachid Zaim, Qike Li, A. Grant Schissler, Yves A. Lussier |
| 2017 | AMIA | Word-of-Mouth Innovation: Hypothesis Generation for Supplement Repurposing based on Consumer Reviews. | Jung-wei Fan, Yves A. Lussier |
| 2014 | AMIA | COPD Hospitalization Risk Increased with Distinct Patterns of Multiple Systems Comorbidities Unveiled by Network Modeling. | Young Ji Lee, Andrew D. Boyd, Jianrong Li, Vincent Gardeux, Colleen Kenost, Donald Saner, Haiquan Li, Ivo L. Abraham, Jerry A. Krishnan, Yves A. Lussier |
| 2014 | AMIA | What's In A Name: Precision Medicine and a New Nosology. | Mark S. Tuttle, Stuart J. Nelson, Yves A. Lussier, Amber M. Johnson |
| 2014 | INLG | PatientNarr: Towards generating patient-centric summaries of hospital stays. | Barbara Di Eugenio, Andrew D. Boyd, Camillo Lugaresi, Abhinaya Balasubramanian, Gail M. Keenan, Mike D. Burton, Tamara Goncalves Rezende Macieira, Jianrong Li, Yves A. Lussier |
| 2013 | AMIA | HospSum: Integrating physician discharge notes with coded nursing care data to generate patient-centric summaries. | Barbara Di Eugenio, Camillo Lugaresi, Gail M. Keenan, Yves A. Lussier, Jianrong Li, Mike D. Burton, Carol Friedman, Andrew D. Boyd |
| 2013 | PSB | Interpreting Personal Transcriptomes: Personalized Mechanism-Scale Profiling of RNA-seq Data. | Alan Perez-Rathke, Haiquan Li, Yves A. Lussier |
| 2012 | AMIA | Towards Mechanism Classifiers: Expression-anchored Gene Ontology Signature Predicts Clinical Outcome in Lung Adenocarcinoma Patients. | Xinan Yang, Haiquan Li, Kelly Regan, Jianrong Li, Yong Huang, H. Rosie Xing, Yves A. Lussier |
| 2011 | CBMS | Scalability and cost of a cloud-based approach to medical NLP. | Kyle Chard, Michael Russell, Yves A. Lussier, Eneida A. Mendona, Jonathan C. Silverstein |
| 2009 | PSB | Session Introduction. | Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Atul J. Butte, Maricel G. Kann |
| 2008 | PSB | Session Introduction. | Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Marco Punta, Atul J. Butte, Maricel G. Kann |
| 2007 | AMIA | Detection of Practice Pattern Trends through Natural Language Processing of Clinical Narratives and Biomedical Literature. | Elizabeth S. Chen, Peter D. Stetson, Yves A. Lussier, Marianthi Markatou, George Hripcsak, Carol Friedman |
| 2007 | AMIA | Information-Theoretic Classification of SNOMED Improves the Organization of Context-Sensitive Excerpts from Cochrane Reviews. | Lee T. Sam, Tara Borlawsky, Ying Tao, Jianrong Li, Carol Friedman, Barry Smith, Yves A. Lussier |
| 2007 | ISMB | Information theory applied to the sparse gene ontology annotation network to predict novel gene function. | Ying Tao, Lee T. Sam, Jianrong Li, Carol Friedman, Yves A. Lussier |
| 2007 | PSB | Discovery of Protein Interaction Networks Shared by Diseases. | Lee T. Sam, Yang Liu, Jianrong Li, Carol Friedman, Yves A. Lussier |
| 2006 | AMIA | Generating Executable Knowledge for Evidence-Based Medicine Using Natural Language and Semantic Processing. | Tara Borlawsky, Carol Friedman, Yves A. Lussier |
| 2006 | PSB | PhenoGO: Assigning Phenotypic Context to Gene Ontology Annotations with Natural Language Processing. | Yves A. Lussier, Tara Borlawsky, Daniel Rappaport, Yang Liu, Carol Friedman |
| 2006 | PSB | Session Introduction. | Robert Stevens, Olivier Bodenreider, Yves A. Lussier |
| 2005 | AMIA | Partitioning Knowledge Bases between Advanced Notification and Clinical Decision Support Systems. | Tara Borlawsky, Jianrong Li, Srikant Jalan, Edie Stern, Rose Williams, Yves A. Lussier |
| 2005 | AMIA | Natural Language Processing in the Molecular Imaging Domain. | P. Karina Tulipano, Ying Tao, Pat Zanzonico, Katherine Kolbert, Yves A. Lussier, Carol Friedman |
| 2005 | PERCOM | Cascading Policies Provide Fault Tolerance for Pervasive Clinical Communications. | Rose Williams, Srikant Jalan, Edie Stern, Yves A. Lussier |
| 2005 | PSB | GenesTrace: Phenomic Knowledge Discovery via Structured Terminology. | Michael N. Cantor, Indra Neil Sarkar, Olivier Bodenreider, Yves A. Lussier |
| 2004 | PSB | Terminological Mapping for High Throughput Comparative Biology of Phenotypes. | Yves A. Lussier, Jianrong Li |
| 2003 | AMIA | Putting Data Integration into Practice: Using Biomedical Terminologies to Add Structure to Existing Data Sources. | Michael N. Cantor, Yves A. Lussier |
| 2003 | AMIA | Adapting Current Arden Syntax Knowledge for an Object Oriented Event Monitor. | Jeeyae Choi, Yves A. Lussier, Eneida A. Mendona |
| 2003 | AMIA | Guideline Interaction: a study of interactions among drug-disease contraindication rules. | Te-Hui Kuo, Eneida A. Mendona, Jianrong Li, Yves A. Lussier |
| 2003 | AMIA | A "Systematics" Tool for Medical Terminologies. | Ying Tao, Eneida A. Mendona, Yves A. Lussier |
| 2003 | PSB | Linking Biomedical Language Information and Knowledge Resources in the 21st Century: GO and UMLS. | Indra Neil Sarkar, Michael N. Cantor, R. Gelman, Frank W. Hartel, Yves A. Lussier |
| 2002 | AMIA | A knowledge framework for computational molecular-disease relationships in cancer. | Michael N. Cantor, Yves A. Lussier |
| 2002 | AMIA | Web-based tailoring and its effect on self-efficacy: results from the MI-HEART randomized controlled trial. | Rita Kukafka, Yves A. Lussier, P. Eng, Vimla L. Patel, James J. Cimino |
| 2002 | AMIA | An integrative model for in-silico clinical-genomics discovery science. | Yves A. Lussier, Indra Neil Sarkar, Michael Cantor |
| 2002 | AMIA | Exploring SNOMED Using Phylogenetic Analysis Tools. | Indra Neil Sarkar, Michael N. Cantor, Robert DeSalle, Yves A. Lussier |
| 2002 | AMIA | Extended attributes of event monitor systems for criteria-based notification modalities. | Ying Tao, Dongwen Wang, Edward H. Shortliffe, Yves A. Lussier |
| 2001 | AMIA | The MI-HEART Project: Information Technology (IT) for One-to-One Tailored Patient Communication. | Rita Kukafka, Yves A. Lussier, Vimla L. Patel, James J. Cimino |
| 2001 | AMIA | Harnessing Web Information Technologies for Secure, Adaptive and Individualized Health Communications. | Jianhua Li, Yves A. Lussier, Rita Kukafka, James J. Cimino |
| 2001 | AMIA | A study of abbreviations in the UMLS. | Hongfang Liu, Yves A. Lussier, Carol Friedman |
| 2001 | AMIA | MI-HEART: a Comprehensive Management System to Deliver, Monitor and Measure Efficacy of Individualized Web-based Education. | Yves A. Lussier, Rita Kukafka, Jianhua Li, Vimla L. Patel, James J. Cimino |
| 2001 | AMIA | Lessons Learned in the Early Phase of the MI-HEART Clinical Trial. | Yves A. Lussier, Rita Kukafka, Tamiru L. Mammo, Allison Linfante, Vimla L. Patel, James J. Cimino |
| 2001 | AMIA | Automating SNOMED coding using medical language understanding: a feasibility study. | Yves A. Lussier, Lyudmila Shagina, Carol Friedman |
| 2000 | AMIA | A Web-based System For Prediction Of Coronary Heart Disease Risk Using The Framingham Algorithm. | Jen-Hsiang Chuang, Rita Kukafka, Yves A. Lussier, Robert A. Jenders, James J. Cimino |
| 2000 | AMIA | Developing and Evaluating Theory-based Educational Content for WEB Applications. | Rita Kukafka, Yves A. Lussier, James J. Cimino |
| 2000 | AMIA | Formal combinations of guidelines: a requirement for self-administered personalized health education. | Yves A. Lussier, Rita Kukafka, Vimla L. Patel, James J. Cimino |
| 2000 | AMIA | Automating ICD-9-CM Encoding Using Medical Language Processing: A Feasibility Study. | Yves A. Lussier, Lyudmila Shagina, Carol Friedman |
| 2000 | AMIA | Improving the Development of Composite Educational Guidelines Using Decomposition of Concept Lattices. | Yves A. Lussier, Dongwen Wang, Rita Kukafka, James J. Cimino |
| 1999 | AMIA | Modeling patient response to acute myocardial infarction: implications for a tailored technology-based program to reduce patient delay. | Rita Kukafka, Yves A. Lussier, Vimla L. Patel, James J. Cimino |
| 1999 | AMIA | Overcoming the Barriers of Web-Based Interventions for Elder Patients: Enabling Strategies for the MI HEART Clinical Trial. | Yves A. Lussier, Rita Kukafka, James J. Cimino |
| 1998 | AMIA | Measuring the Accuracy of a Nomenclature Encoder Supporting Postcoordination. | Yves A. Lussier |
| 1997 | AMIA | Comparing SNOMED and ICPC retrieval accuracies using relational database models. | Yves A. Lussier, Michel Bourque |