| 2015 | SIGMOD | RBench: Application-Specific RDF Benchmarking. | Shi Qiao, Z. Meral zsoyoglu |
| 2010 | PSB | COKGEN: A Software for the Identification of Rare Copy Number Variation from SNP Microarrays. | Gkhan Yavas, Mehmet Koyutrk, Z. Meral zsoyoglu, Meetha P. Gould, Thomas LaFramboise |
| 2010 | SAC | Advanced querying interface for biochemical network databases. | Brendan Elliott, Stephen Mayes, Ali Cakmak, Gultekin zsoyoglu, Z. Meral zsoyoglu |
| 2009 | IDEAS | A complete translation from SPARQL into efficient SQL. | Brendan Elliott, En Cheng, Chimezie Thomas-Ogbuji, Z. Meral zsoyoglu |
| 2007 | SSDBM | Gene Ontology-Based Annotation Analysis and Categorization of Metabolic Pathways. | Ali Cakmak, Mustafa Kirac, Marc R. Reynolds, Z. Meral zsoyoglu, Gultekin zsoyoglu |
| 2007 | SSDBM | Efficient Evaluation of Inbreeding Queries on Pedigree Data. | Brendan Elliott, Suleyman Fatih Akgul, Stephen Mayes, Z. Meral zsoyoglu |
| 2006 | SSDBM | A Framework for Querying Pedigree Data. | Brendan Elliott, Suleyman Fatih Akgul, Z. Meral zsoyoglu, Elena A. Manilich |
| 2005 | VLDB | Rewriting XPath Queries Using Materialized Views. | Wanhong Xu, Z. Meral zsoyoglu |
| 2004 | SSDBM | A Tree-Structured Query Interface for Querying Semi-Structured Data. | Scott Newman, Z. Meral zsoyoglu |
| 2004 | SSDBM | Improvements in Distance-Based Indexing. | Murat Tasan, Z. Meral zsoyoglu |
| 2003 | DEXA | XML Restructuring and Integration for Tabular Data. | Wei Yu, Z. Meral zsoyoglu, Gultekin zsoyoglu |
| 2003 | ICDE | Distance Based Indexing for String Proximity Search. | Sleyman Cenk Sahinalp, Murat Tasan, Jai Macker, Z. Meral zsoyoglu |
| 2003 | SAC | Pathways Database System: An Integrated Set of Tools for Biological Pathways. | Wanhong Xu, Larkshmi Krishnamurthy, Murat Tasan, Gultekin zsoyoglu, Joseph H. Nadeau, Z. Meral zsoyoglu, Greg Schaeffer |
| 2002 | VLDB | Sideway Value Algebra for Object-Relational Databases. | Gultekin zsoyoglu, Abdullah Al-Hamdani, Ismail Sengr Altingvde, Selma Ayse zel, zgr Ulusoy, Z. Meral zsoyoglu |
| 2001 | DEXA | Topic-Centric Querying of Web Information Resources. | Ismail Sengr Altingvde, Selma Ayse zel, zgr Ulusoy, Gultekin zsoyoglu, Z. Meral zsoyoglu |
| 1999 | ICDE | A Graph Query Language and Its Query Processing. | Lei Sheng, Z. Meral zsoyoglu, Gultekin zsoyoglu |
| 1998 | DEXA | Indexing Valid Time Intervals. | Tolga Bozkaya, Z. Meral zsoyoglu |
| 1997 | CIKM | Matching and Indexing Sequences of Different Lengths. | Tolga Bozkaya, Nasser Yazdani, Z. Meral zsoyoglu |
| 1997 | SIGMOD | Distance-Based Indexing for High-Dimensional Metric Spaces. | Tolga Bozkaya, Z. Meral zsoyoglu |
| 1996 | CIKM | Processing OODB Queries by O-Algebra. | Jie Lin, Z. Meral zsoyoglu |
| 1996 | ICDE | VISUAL: A Graphical Icon-Based Query Language. | Nevzat Hurkan Balkir, Eser Skan, Gultekin zsoyoglu, Z. Meral zsoyoglu |
| 1996 | SSDBM | A Scientific Multimedia Database System for Polymer Science Experiments. | Taekyong Lee, Tolga Bozkaya, Huang-Cheng Kuo, Gultekin zsoyoglu, Z. Meral zsoyoglu |
| 1996 | SSDBM | Sequence Matching of Images. | Nasser Yazdani, Z. Meral zsoyoglu |
| 1995 | DEXA | Extended Set Operators for Nested Relations and Complex Objects | Eser Skan, Z. Meral zsoyoglu |
| 1994 | ICTAI | Providing Semantic Intelligent Answers to Recursive Queries. | Xubo Zhang, Z. Meral zsoyoglu |
| 1994 | SSDBM | A Scientific Database System for Polymers and Materials Engineering Needs. | Gultekin zsoyoglu, Z. Meral zsoyoglu, Kumar V. Vadaparty |
| 1994 | SSDBM | A Framework for Feature-Based Indexing for Spatial Databases. | Nasser Yazdani, Z. Meral zsoyoglu, Gultekin zsoyoglu |
| 1993 | DEXA | On the Maintenance of Implication Integrity Constraints. | Naci Ishakbeyoglu, Z. Meral zsoyoglu |
| 1992 | ICDE | A Keying Method for a Nested Relational Database Management System. | Z. Meral zsoyoglu, Jian Wang |
| 1991 | DEXA | Meta Variables and Inheritance in an Object-Oriented Data Model. | Yanjun Lou, Z. Meral zsoyoglu |
| 1991 | SIGMOD | LLO: An Object-Oriented Deductive Language with Methods and Method Inheritance. | Yanjun Lou, Z. Meral zsoyoglu |
| 1989 | ICDE | Synchronized Counting Method. | Hussien Aly, Z. Meral zsoyoglu |
| 1987 | ICDE | A Design Method for Nested Relational Databases. | Z. Meral zsoyoglu, Li-Yan Yuan |
| 1987 | PODS | Logical Design of Relational Database Systems. | Li-Yan Yuan, Z. Meral zsoyoglu |
| 1987 | SIGMOD | Non-deterministic Modelling of Logical Queries in Deductive Databases. | Hussien Aly, Z. Meral zsoyoglu |
| 1987 | SIGMOD | A System for Semantic Query Optimization. | Sreekumar T. Shenoy, Z. Meral zsoyoglu |
| 1986 | PODS | Unifying Functional and Multivalued Dependencies for Relational Database Design. | Li-Yan Yuan, Z. Meral zsoyoglu |
| 1986 | XP | Notions of Dependency Preservation for Nested Relations. | Z. Meral zsoyoglu, Li-Yan Yuan |
| 1985 | PODS | A Normal Form for Nested Relations. | Z. Meral zsoyoglu, Li-Yan Yuan |
| 1985 | SIGMOD | A Language and a Physical Organization Technique for Summary Tables. | Gultekin zsoyoglu, Z. Meral zsoyoglu, Francisco Mata |
| 1984 | ICDE | Summary-Table-By-Example: A Database Query Language for Manipulating Summary Data. | Z. Meral zsoyoglu, Gultekin zsoyoglu |
| 1984 | PODS | On the Cyclic to Acyclic Scheme Transformation and Solving Cyclic Queries. | Z. Meral zsoyoglu, Elarbi Choukhmane |
| 1984 | VLDB | Statistical Databases. | Gultekin zsoyoglu, Z. Meral zsoyoglu |
| 1983 | SSDBM | Features of a System for Statistical Databases. | Gultekin zsoyoglu, Z. Meral zsoyoglu |
| 1983 | SSDBM | An Extension of Relational Algebra for Summary Tables. | Z. Meral zsoyoglu, Gultekin zsoyoglu |
| 1981 | SSDBM | Update Handling Techniques in Statistical Databases. | Gultekin zsoyoglu, Z. Meral zsoyoglu |
| 1979 | SIGMOD | Performance Analysis of three Related Assignment Problems. | Clement T. Yu, K. Lam, M. K. Siu, Z. Meral zsoyoglu |