| 2025 | ICML | PPDiff: Diffusing in Hybrid Sequence-Structure Space for Protein-Protein Complex Design. | Zhenqiao Song, Tianxiao Li, Lei Li, Martin Renqiang Min |
| 2024 | ACL | Hire a Linguist!: Learning Endangered Languages in LLMs with In-Context Linguistic Descriptions. | Kexun Zhang, Yee Man Choi, Zhenqiao Song, Taiqi He, William Yang Wang, Lei Li |
| 2024 | ICML | SurfPro: Functional Protein Design Based on Continuous Surface. | Zhenqiao Song, Tinglin Huang, Lei Li, Wengong Jin |
| 2024 | ICML | Generative Enzyme Design Guided by Functionally Important Sites and Small-Molecule Substrates. | Zhenqiao Song, Yunlong Zhao, Wenxian Shi, Wengong Jin, Yang Yang, Lei Li |
| 2023 | EMNLP | INSTRUCTSCORE: Towards Explainable Text Generation Evaluation with Automatic Feedback. | Wenda Xu, Danqing Wang, Liangming Pan, Zhenqiao Song, Markus Freitag, William Wang, Lei Li |
| 2023 | ICML | Importance Weighted Expectation-Maximization for Protein Sequence Design. | Zhenqiao Song, Lei Li |
| 2022 | ICLR | switch-GLAT: Multilingual Parallel Machine Translation Via Code-Switch Decoder. | Zhenqiao Song, Hao Zhou, Lihua Qian, Jingjing Xu, Shanbo Cheng, Mingxuan Wang, Lei Li |
| 2022 | NAACL | MTG: A Benchmark Suite for Multilingual Text Generation. | Yiran Chen, Zhenqiao Song, Xianze Wu, Danqing Wang, Jingjing Xu, Jiaze Chen, Hao Zhou, Lei Li |
| 2021 | DASFAA | Generating Personalized Titles Incorporating Advertisement Profile. | Jingbing Wang, Zhuolin Hao, Minping Zhou, Jiaze Chen, Hao Zhou, Zhenqiao Song, Jinghao Wang, Jiandong Yang, Shiguang Ni |
| 2021 | WSDM | Triangular Bidword Generation for Sponsored Search Auction. | Zhenqiao Song, Jiaze Chen, Hao Zhou, Lei Li |
| 2019 | ACL | Generating Responses with a Specific Emotion in Dialog. | Zhenqiao Song, Xiaoqing Zheng, Lu Liu, Mu Xu, Xuanjing Huang |