| 2011 | Polynomial-Time Approximation Algorithms for Weighted LCS Problem. | Marek Cygan, Marcin Kubica, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen |
| 2011 | Automatic Discovery of Patterns in Media Content. | Nello Cristianini |
| 2011 | Space Lower Bounds for Online Pattern Matching. | Raphal Clifford, Markus Jalsenius, Ely Porat, Benjamin Sach |
| 2011 | Restricted Common Superstring and Restricted Common Supersequence. | Raphal Clifford, Zvi Gotthilf, Moshe Lewenstein, Alexandru Popa |
| 2011 | Efficient Seeds Computation Revisited. | Michalis Christou, Maxime Crochemore, Costas S. Iliopoulos, Marcin Kubica, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Bartosz Szreder, Tomasz Walen |
| 2011 | Tractability Results for the Consecutive-Ones Property with Multiplicity. | Cdric Chauve, Jn Manuch, Murray Patterson, Roland Wittler |
| 2011 | Efficient Matching of Biological Sequences Allowing for Non-overlapping Inversions. | Domenico Cantone, Salvatore Cristofaro, Simone Faro |
| 2011 | Tractability and Approximability of Maximal Strip Recovery. | Laurent Bulteau, Guillaume Fertin, Minghui Jiang, Irena Rusu |
| 2011 | Fast Error-Tolerant Quartet Phylogeny Algorithms. | Daniel Gregory Brown, Jakub Truszkowski |
| 2011 | Simple Real-Time Constant-Space String Matching. | Dany Breslauer, Roberto Grossi, Filippo Mignosi |
| 2011 | Real-Time Streaming String-Matching. | Dany Breslauer, Zvi Galil |
| 2011 | Substring Range Reporting. | Philip Bille, Inge Li Grtz |
| 2011 | Lightweight BWT Construction for Very Large String Collections. | Markus J. Bauer, Anthony J. Cox, Giovanna Rosone |
| 2011 | LRM-Trees: Compressed Indices, Adaptive Sorting, and Compressed Permutations. | Jrmy Barbay, Johannes Fischer, Gonzalo Navarro |
| 2010 | Algorithms for Forest Pattern Matching. | Kaizhong Zhang, Yunkun Zhu |
| 2010 | Extension and Faster Implementation of the GRP Transform for Lossless Compression. | Hidetoshi Yokoo |
| 2010 | A Minimal Periods Algorithm with Applications. | Zhi Xu |
| 2010 | Bounds on the Minimum Mosaic of Population Sequences under Recombination. | Yufeng Wu |
| 2010 | Approximate All-Pairs Suffix/Prefix Overlaps. | Niko Vlimki, Susana Ladra, Veli Mkinen |
| 2010 | Sampled Longest Common Prefix Array. | Jouni Sirn |
| 2010 | Bidirectional Search in a String with Wavelet Trees. | Thomas Schnattinger, Enno Ohlebusch, Simon Gog |
| 2010 | Parallel and Distributed Compressed Indexes. | Lus M. S. Russo, Gonzalo Navarro, Arlindo L. Oliveira |
| 2010 | Mod/Resc Parsimony Inference. | Igor Nor, Danny Hermelin, Sylvain Charlat, Jan Engelstadter, Max Reuter, Olivier Duron, Marie-France Sagot |
| 2010 | Small-Space 2D Compressed Dictionary Matching. | Shoshana Neuburger, Dina Sokol |
| 2010 | The Highest Expected Reward Decoding for HMMs with Application to Recombination Detection. | Michal Nnsi, Toms Vinar, Brona Brejov |