| 2006 | WSC | CellDesigner: a modeling tool for biochemical networks. | Akira Funahashi, Yukiko Matsuoka, Akiya Jouraku, Hiroaki Kitano, Norihiro Kikuchi |
| 2005 | ICPP | VLAN-Based Minimal Paths in PC Cluster with Ethernet on Mesh and Torus. | Tomohiro Otsuka, Michihiro Koibuchi, Akiya Jouraku, Hideharu Amano |
| 2004 | EUC | Folded Fat H-Tree: An Interconnection Topology for Dynamically Reconfigurable Processor Array. | Yutaka Yamada, Hideharu Amano, Michihiro Koibuchi, Akiya Jouraku, Kenichiro Anjo, Katsunobu Nishimura |
| 2003 | CLUSTER | Performance Evaluation of Routing Algorithms in RHiNET-2 Cluster. | Michihiro Koibuchi, Konosuke Watanabe, Kenichi Kono, Akiya Jouraku, Hideharu Amano |
| 2003 | FPL | A Dynamically Adaptive Switching Fabric on a Multicontext Reconfigurable Device. | Hideharu Amano, Akiya Jouraku, Kenichiro Anjo |
| 2003 | ICPP | Descending Layers Routing: A Deadlock-Free Deterministic Routing using Virtual Channels in System Area Networks with Irregular Topologies. | Michihiro Koibuchi, Akiya Jouraku, Konosuke Watanabe, Hideharu Amano |
| 2002 | PDPTA | The Impact of Path Selection Algorithm of Adaptive Routing for Implementing Deterministic Routing. | Michihiro Koibuchi, Akiya Jouraku, Hideharu Amano |
| 2001 | CATA | The impact of output selection function on adaptive routing. | Akira Funahashi, Michihiro Koibuchi, Akiya Jouraku, Hideharu Amano |
| 2001 | ICPP | L-Turn Routing: An Adaptive Routing in Irregular Networks. | Michihiro Koibuchi, Akira Funahashi, Akiya Jouraku, Hideharu Amano |