| 2026 | HPDC | Endeavor: Efficient PairHMM for Detection of DNA Variants in Genome-Scale Datasets. | Miguel Graa, Aleksandar Ilic |
| 2026 | SAC | Move the Roof: Model-driven Methodology for Designing Efficient Deep Learning Architectures. | Alexandre Rodrigues, Mateo Vzquez, Mohammad Ali Maleki, Muhammad Waqar Azhar, Aleksandar Ilic, Pedro Trancoso, Leonel Sousa |
| 2025 | ICPP | Thievory: Graph Processing with Multi-GPU Memory Stealing. | Joo Brotas, Ricardo Nobre, Aleksandar Ilic |
| 2025 | ICS | EPIClear: Exploiting Domain-Specific Features for Epistasis Detection Acceleration on Tensor Cores. | Ricardo Nobre, Miguel Graa, Leonel Sousa, Aleksandar Ilic |
| 2024 | DSD | External Memory Protection on FPGA-Based Embedded Systems. | Joo Carlos Resende, Aleksandar Ilic, Ricardo Chaves |
| 2024 | EuroPar | Exploring the Limits of Cross-Platform Sparse Tensor Processing. | Filipe Borralho, Leonel Sousa, Aleksandar Ilic |
| 2024 | SC | P-MoVE: Performance Monitoring and Visualization with Encoded Knowledge. | Fatih Tasyaran, Osman Yasal, Jos A. Morgado, Aleksandar Ilic, Didem Unat, Kamer Kaya |
| 2023 | CHASE | Interpreting High Order Epistasis Using Sparse Transformers. | Miguel Graa, Diogo Marques, Sergio Santander-Jimnez, Leonel Sousa, Aleksandar Ilic |
| 2023 | EuroPar | Sparse-Aware CARM: Rooflining Locality of Sparse Computations. | Afonso Coutinho, Diogo Marques, Leonel Sousa, Aleksandar Ilic |
| 2023 | EuroPar | A Performance Modelling-Driven Approach to Hardware Resource Scaling. | Alexandre Rodrigues, Leonel Sousa, Aleksandar Ilic |
| 2023 | SC | Bringing Order to Sparsity: A Sparse Matrix Reordering Study on Multicore CPUs. | James D. Trotter, Sinan Ekmekibasi, Johannes Langguth, Tugba Torun, Emre Dzakin, Aleksandar Ilic, Didem Unat |
| 2022 | ICPP | Tensor-Accelerated Fourth-Order Epistasis Detection on GPUs. | Ricardo Nobre, Aleksandar Ilic, Sergio Santander-Jimnez, Leonel Sousa |
| 2021 | FCCM | HEDAcc: FPGA-based Accelerator for High-order Epistasis Detection. | Gaspar Ribeiro, Nuno Neves, Sergio Santander-Jimnez, Aleksandar Ilic |
| 2021 | ICPP | Fourth-Order Exhaustive Epistasis Detection for the xPU Era. | Ricardo Nobre, Aleksandar Ilic, Sergio Santander-Jimnez, Leonel Sousa |
| 2020 | EuroPar | Heterogeneous CPU+iGPU Processing for Efficient Epistasis Detection. | Rafael Campos, Diogo Marques, Sergio Santander-Jimnez, Leonel Sousa, Aleksandar Ilic |
| 2020 | HiPC | Performance Optimization and Scalability Analysis of the MGB Hydrological Model. | Henrique Renn de Azeredo Freitas, Celso Luiz Mendes, Aleksandar Ilic |
| 2020 | JSSPP | Accelerating 3-Way Epistasis Detection with CPU+GPU Processing. | Ricardo Nobre, Sergio Santander-Jimnez, Leonel Sousa, Aleksandar Ilic |
| 2018 | HPCA | GPGPU Power Modeling for Multi-domain Voltage-Frequency Scaling. | Joo Guerreiro, Aleksandar Ilic, Nuno Roma, Pedro Toms |
| 2017 | ISPASS | Exploring GPU performance, power and energy-efficiency bounds with Cache-aware Roofline Modeling. | Andre Lopes, Frederico Pratas, Leonel Sousa, Aleksandar Ilic |
| 2017 | SC | Modeling Large Compute Nodes with Heterogeneous Memories with Cache-Aware Roofline Model. | Nicolas Denoyelle, Brice Goglin, Aleksandar Ilic, Emmanuel Jeannot, Leonel Sousa |
| 2016 | EuroPar | Performance and Power-Aware Classification for Frequency Scaling of GPGPU Applications. | Joo Guerreiro, Aleksandar Ilic, Nuno Roma, Pedro Toms |
| 2016 | IOLTS | SET response of a SEL protection switch for 130 and 250 nm CMOS technologies. | Marko S. Andjelkovic, Aleksandar Ilic, Vladimir Petrovic, Miljana Nenadovic, Zoran Stamenkovic, Goran S. Ristic |
| 2016 | MMSP | Efficient HEVC decoder for heterogeneous CPU with GPU systems. | Biao Wang, Mauricio Alvarez-Mesa, Chi Ching Chi, Ben H. H. Juurlink, Diego F. de Souza, Aleksandar Ilic, Nuno Roma, Leonel Sousa |
| 2015 | PDP | Multi-kernel Auto-Tuning on GPUs: Performance and Energy-Aware Optimization. | Joo Guerreiro, Aleksandar Ilic, Nuno Roma, Pedro Toms |
| 2014 | EuroPar | SchedMon: A Performance and Energy Monitoring Tool for Modern Multi-cores. | Lus Tania, Aleksandar Ilic, Pedro Toms, Leonel Sousa |
| 2014 | ICIP | Collaborative inter-prediction on CPU+GPU systems. | Svetislav Momcilovic, Aleksandar Ilic, Nuno Roma, Leonel Sousa |
| 2014 | ICPP | FEVES: Framework for Efficient Parallel Video Encoding on Heterogeneous Systems. | Aleksandar Ilic, Svetislav Momcilovic, Nuno Roma, Leonel Sousa |
| 2014 | SBAC-PAD | Performance-Aware Task Management and Frequency Scaling in Embedded Systems. | Francisco Gaspar, Aleksandar Ilic, Pedro Toms, Leonel Sousa |
| 2013 | Networking | Critical regions and region-disjoint paths in a network. | Stojan Trajanovski, Fernando A. Kuipers, Piet Van Mieghem, Aleksandar Ilic, Jon Crowcroft |
| 2013 | PPAM | Monitoring Performance and Power for Application Characterization with the Cache-Aware Roofline Model. | Diogo Anto, Lus Tania, Aleksandar Ilic, Frederico Pratas, Pedro Toms, Leonel Sousa |
| 2013 | PPAM | Transparent Application Acceleration by Intelligent Scheduling of Shared Library Calls on Heterogeneous Systems. | Joo Colao, Adrian Matoga, Aleksandar Ilic, Nuno Roma, Pedro Toms, Ricardo Chaves |
| 2012 | EuroPar | Hierarchical Partitioning Algorithm for Scientific Computing on Highly Heterogeneous CPU + GPU Clusters. | David Clarke, Aleksandar Ilic, Alexey L. Lastovetsky, Leonel Sousa |
| 2012 | ISPA | Simultaneous Multi-Level Divisible Load Balancing for Heterogeneous Desktop Systems. | Aleksandar Ilic, Leonel Sousa |
| 2012 | PDP | On Realistic Divisible Load Scheduling in Highly Heterogeneous Distributed Systems. | Aleksandar Ilic, Leonel Sousa |
| 2011 | EuroPar | Scheduling Divisible Loads on Heterogeneous Desktop Systems with Limited Memory. | Aleksandar Ilic, Leonel Sousa |
| 2008 | ISPDC | Distributed Web-based Platform for Computer Architecture Simulation. | Aleksandar Ilic, Frederico Pratas, Leonel Sousa |