| 2023 | CALCO | String Diagram Rewriting Modulo Commutative (Co)Monoid Structure. | Aleksandar Milosavljevic, Robin Piedeleu, Fabio Zanasi |
| 2023 | DCAI | Imagelytics: A Deep Learning-Based Image Classification Tool to Support Bioassessment. | Aleksandar Milosavljevic, Bratislav Predic, Djuradj Milosevic |
| 2017 | BIBE | Comparative Finite Element Analysis of Patient-Specific Tricuspid and Bicuspid Aortic Valve. | Smiljana Djorovic, Nenad Filipovic, Aleksandar Milosavljevic, Lazar U. Velicki |
| 2008 | PSB | Pash 2.0: Scaleable Sequence Anchoring for Next-Generation Sequencing Technologgies. | Cristian Coarfa, Aleksandar Milosavljevic |
| 2007 | ADBIS | Prediction of Bus Motion and Continuous Query Processing for Traveler Information Services. | Bratislav Predic, Dragan Stojanovic, Slobodanka Djordjevic-Kajan, Aleksandar Milosavljevic, Dejan D. Rancic |
| 2002 | WABI | Pooled Genomic Indexing (PGI): Mathematical Analysis and Experiment Design. | Mikls Csrs, Aleksandar Milosavljevic |
| 1996 | ISMB | Genome-Scale DNA Sequence Recognition by Hybridization to Short Oligomers. | Aleksandar Milosavljevic, Suzana Savkovic, Radomir Crkvenjakov, David Salbego, Hope Serrato, Heidi Kreuzer, Anne Gemmell, Shawna Batus, Danica Grujic, Susan Carnahan, Jovanka Tepavcevic |
| 1994 | ISMB | Sequence Comparisons via Algorithmic Mutual Information. | Aleksandar Milosavljevic |
| 1993 | ISMB | Discovering Sequence Similarity by the Algorithmic Significance Method. | Aleksandar Milosavljevic |
| 1989 | COLT | Informed Parsimonious Inference of Prototypical Genetic Sequences. | Aleksandar Milosavljevic, David Haussler, Jerzy Jurka |