| 2026 | Selecting Chromosomes for Polygenic Traits: Algorithms and Complexity. | Or Zuk |
| 2026 | Improved Approximation Algorithms and Hardness Results for Shortest Common Superstring with Reverse Complements. | Ryosuke Yamano, Tetsuo Shibuya |
| 2026 | Front Matter, Table of Contents, Preface, Conference Organization. | |
| 2026 | Theoretically and Practically Faster Algorithms for Protein Structure Alignment. | Masahito Tsukahara, Tetsuo Shibuya |
| 2026 | Quantum Closest-Pair Search for Biological Sequences via k-Mer Distribution Statistics. | Zhezheng Xander Song, Carl Kingsford |
| 2026 | 10-Minimizers: A Promising Class of Constant-Space Minimizers. | Arseny M. Shur, Ido Tziony, Yaron Orenstein |
| 2026 | Quik 2.0: Efficient Large-Scale DNA Barcode Calling. | Steffen Schler, Antonia Schmidt, Matthias Mller-Hannemann |
| 2026 | DivQuant: Estimation of Species Richness and Entropy from Small Samples. | Johanna Elena Schmitz, Sven Rahmann |
| 2026 | Statistical Inconsistency of Error-Correction Objectives for Perfect Phylogenies. | Gryte Satas, Matthew A. Myers, Sohrab P. Shah |
| 2026 | Revisiting O(n log log n) Chaining for Anchored Edit Distance. | Nicola Rizzo, Ragnar Groot Koerkamp |
| 2026 | Exact and Efficient Inference of Tumor Phylogenies via Novel Pruning Techniques. | Juan Luque, Jacob Gilbert, Arjun Subramanian, Aravind Srinivasan, Salem Malikic, S. Cenk Sahinalp |
| 2026 | Reconciling and Comparing Variation Graphs Using Homology Relations. | Anna Lisiecka, Adam Cicherski, Norbert Dojer |
| 2026 | Constructing Incompatibility Graphs of Pairs of Trees in Optimal Output-Sensitive Time. | Manuel Lafond |
| 2026 | The Anti-Lexicographic SUS-Anchor: An Empirically Optimal Selection Scheme. | Ragnar Groot Koerkamp |
| 2026 | Designing Exact Spaced Seed Filters Based on Combined Hit and Coverage Information. | Moein Karami, Jens Zentgraf, Sven Rahmann |
| 2026 | PRISM: Partition-Function Decomposition into Structural Classes for Hierarchically Constrained RNA Pseudoknot Ensembles. | Mateo Gray, Sebastian Will, Hosna Jabbari |
| 2026 | FPT Learning of Sparse, Robust and Interpretable Generative Models of RNA Evolution. | Samuel Gardelle, Laurent Bulteau, Yann Ponty |
| 2026 | Turnpike with Uncertain Measurements: Triangle-Equality Integer Programming with a Deterministic Recovery Guarantee. | C. S. Elder, Guillaume Marais, Carl Kingsford |
| 2026 | Contig Model for Variable-Order de Bruijn Graphs. | Diego Daz-Domnguez, Pierfrancesco Martinello, Taku Onodera, Simon J. Puglisi, Leena Salmela |
| 2026 | Is Level-1 Blob Reconstruction Under the Network Multispecies Coalescent Easy? | Junyan Dai, Erin K. Molloy |
| 2026 | On the Complexity of the (ℓ, k)-Median Problems. | Lus Cunha, Thiago Nascimento, Marlia D. V. Braga, Jens Stoye |
| 2026 | Discriminative Learning of Substitution Matrices and Gap Penalties for Pairwise Alignment of Biological Sequences. | Michal Aleksander Ciach, Elissavet Zacharopoulou, Michal Startek, Blazej Miasojedow, Panagiotis Alexiou |
| 2026 | Minimum Flow Decomposition Guided by Saturating Subflows (Extended Abstract). | Ke Chen, Abhishek Talesara, Sanchal Thakkar, Mingfu Shao |
| 2026 | FBApro: A Fast, Simple Linear Transformation for Diverse Metabolic Modeling Tasks. | Ariel Bruner, Mona Singh |
| 2026 | RNA Inverse Folding Under Stacked Base Pair Maximization. | Tho Boury, Laurent Bulteau, Yann Ponty |